Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2289 ATGCATATCTTAGGGCATTGTTTGGAAATGTATTTTCTTTCACTCCGCTCCACATTTTCCTTGGACCACACTTTAGAAAGCAGATTCTTTTATTATTTTCCATCCTCAAAATCAAAGTTACTGGGGCTTCAGGGCCATAACACAAAGAGTTCGACGCAGCGAGAAGAGGAAGCCATGACCGCAGAGAACGCTGTTGAGTCCTCCGATTTGCCGGTTAAGAGGCAGAGGGATGACGAAGAAAATGGGGTCTGTGTCTCTACCGTTTCTATGGCAGATACGGATGGTGTCAAGCGCTCTGAGCTTATGTCCAATGTTATTCCTGGATGGTTCTCTGAAATCAGCCCAATGTGGCCTGGAGAGGCACACTCCTTAAAGGTGGAAAAGGTCTTATTTGAAGGTAAATCTGATTACCAGAGTGTGATGGTCTTCCAGTCATCAACATATGGAAAGGTCCTTGTTTTAGATGGTGTAATTCAGCTTACTGAAAGAGATGAATGTGCCTACCAGGAAATGATCGTACATCTTCCTCTGTGTTCAATTCAAAATCCCAAAAAGGTTTTGGTTATTGGTGGTGGAGATGGTGGGGTCATCCGAGAAGTAGCACGGCATTCTTCTGTTGAGCAGATAGACATTTGCGAAATTGACAAGATGGTAATTGAAGTTGCCAAACAATTTTTCCCTGAAATAGCGGTAGGGTATGAAGATCCACGTGTGAAACTTAATGTTGGTGATGGAGTTGCATTTTTGAAGGGCGTTCCAGAAGGAACTTATGATGCAATTATAGTCGATTCATCTGACCCTATAGGTCCTGCTCAAGAGCTTTTTGAAAAGCCCTTTTTCGAGTTGGTTGCCAAGGCTCTTCGTTCGGGAGGAGTTGTGAGTACTCAGGCAGAAAGTATATGGCTTCATATGCATATTATTGAGGGCATTGTGGCCAATTGTCGCCAAGTATTTAAAGGCTCTGTCAACTATGCCTGGACCACAGTTCCCACATACCCTAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAAGGACCTCCTGTTGATTTTAAGCATCCGGTGAATCCTATAGATGCAACTGATAAGTCAGCTAGACCACTGAAGTTTTACAACTCTGAGATGCATGAGGCGGCATTTTGTTTGCCAGCTTTTGCCAAGAAAGCCATTGATACTAAAGCAAAATGA 1188 0.4335 MHILGHCLEMYFLSLRSTFSLDHTLESRFFYYFPSSKSKLLGLQGHNTKSSTQREEEAMTAENAVESSDLPVKRQRDDEENGVCVSTVSMADTDGVKRSELMSNVIPGWFSEISPMWPGEAHSLKVEKVLFEGKSDYQSVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMIVHLPLCSIQNPKKVLVIGGGDGGVIREVARHSSVEQIDICEIDKMVIEVAKQFFPEIAVGYEDPRVKLNVGDGVAFLKGVPEGTYDAIIVDSSDPIGPAQELFEKPFFELVAKALRSGGVVSTQAESIWLHMHIIEGIVANCRQVFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPVNPIDATDKSARPLKFYNSEMHEAAFCLPAFAKKAIDTKAK 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2289 395 FunFam Spermidine synthase 1 160 395 - -
Bisa11g2289 395 Gene3D Spermidine synthase, tetramerisation domain 101 159 IPR037163 -
Bisa11g2289 395 NCBIfam fused MFS/spermidine synthase 168 342 - -
Bisa11g2289 395 Pfam Spermidine synthase tetramerisation domain 108 162 IPR035246 -
Bisa11g2289 395 CDD AdoMet_MTases 185 293 - -
Bisa11g2289 395 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 107 344 IPR030374 -
Bisa11g2289 395 NCBIfam spermidine synthase 109 385 IPR001045 GO:0003824
Bisa11g2289 395 FunFam Spermidine synthase 1 100 159 - -
Bisa11g2289 395 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 186 199 IPR030373 -
Bisa11g2289 395 Pfam Spermine/spermidine synthase domain 165 352 - -
Bisa11g2289 395 Gene3D Vaccinia Virus protein VP39 160 395 IPR029063 -
Bisa11g2289 395 PANTHER SPERMIDINE/SPERMINE SYNTHASE 92 392 IPR001045 GO:0003824
Bisa11g2289 395 Hamap Polyamine aminopropyltransferase [speE]. 108 391 IPR001045 GO:0003824
Bisa11g2289 395 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 105 391 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2289 Bisa-ChrBisa11 46943607 46947546 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g2289 11 46943607 46947546 Bisa01g1608 01 27550879 27555064 CCT
Bisa11g2289 11 46943607 46947546 Bisa11g2289 11 46943607 46947546 ECH