Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g1608 ATGGCCGCAGACGGCGTCGTTGCTTCCACCGATTTGCCCGTTAAGAGGCCGAGAGAAGATGAAGAAAATGGGGTTCCAGCTTCTGCCGTCTCTGTGGAGGCGGATGGTAAGAAGGAACCAGATGGTATATCCGCTGTTATTCCTGGGTGGTTCTCCGAAATTAGCCCAATGTGGCCAGGGGAGGCACACTCCTTGAAGGTTGAAAAGATCTTGTTTCAAGAGAAGTCTGACTATCAAAATGTCATGGTCTTCCAGTCATCAACATACGGTAAAGTTCTTGTTTTGGATGGAGTAATTCAGCTCACTGAAAGGGATGAATGTGCTTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCTATTCCAAATCCCAAGAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGGGTCCTGCGGGAAGTAGCACGGCATTCTTCAGTGGAGAAGATAGACATATGTGAAATTGACAAGATGGTAGTTGATGTCTCCAAGCAGTTTTTCCCTGATGTAGCAGTAGGTTATGAGGATCCACGTGTCACACTTCATATCGGTGATGGAGTTGCATTCTTGAAGGCAGCTCCAGAAGGATCCTATGATGCAGTTATAGTGGACTCATCTGACCCTATAGGCCCTGCTCAAGAGCTTTTTGAAAAGCCCTTTTTTGAGTCTGTTGCAAGGGCTCTTCGTCCCGGAGGAGTTGTGTGTACCCAGGCGGAAAGTATATGGCTTCATATGCATATCATTGAGGACATAGTAGCAAACTGTCGCCAGATATTCAAAGGCTCTGTCAACTATGCTTGGACTACAGTTCCCACATACCCAAGTGGGGTGATTGGTTTTATGCTTTGTTCAACCGAGGGACCTCCCGTTGATTTCAAGCATCCTGTGAATCCTATGGATGAAAATGAAAATCTGAAGTCAGCAAGACCATTGAAGTTTTACAACTCTGAGATTCATACAGCAGCTTTCTGTTTGCCATCTTTCGCCAAGAGGGTGATTGAATCTAAAGCAAAGTGA 1017 0.4572 MAADGVVASTDLPVKRPREDEENGVPASAVSVEADGKKEPDGISAVIPGWFSEISPMWPGEAHSLKVEKILFQEKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKQFFPDVAVGYEDPRVTLHIGDGVAFLKAAPEGSYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPMDENENLKSARPLKFYNSEIHTAAFCLPSFAKRVIESKAK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g1608 338 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 46 334 IPR029063 -
Bisa01g1608 338 MobiDBLite consensus disorder prediction 1 27 - -
Bisa01g1608 338 Pfam Spermidine synthase tetramerisation domain 49 103 IPR035246 -
Bisa01g1608 338 FunFam Spermidine synthase 1 101 338 - -
Bisa01g1608 338 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 127 140 IPR030373 -
Bisa01g1608 338 PANTHER SPERMIDINE/SPERMINE SYNTHASE 42 336 IPR001045 GO:0003824
Bisa01g1608 338 CDD AdoMet_MTases 126 237 - -
Bisa01g1608 338 Gene3D Spermidine synthase, tetramerisation domain 42 100 IPR037163 -
Bisa01g1608 338 NCBIfam spermidine synthase 50 328 IPR001045 GO:0003824
Bisa01g1608 338 Hamap Polyamine aminopropyltransferase [speE]. 49 334 IPR001045 GO:0003824
Bisa01g1608 338 Pfam Spermine/spermidine synthase domain 106 293 - -
Bisa01g1608 338 PIRSF Spermidine_synth 38 338 IPR030668 GO:0006595
Bisa01g1608 338 Gene3D Vaccinia Virus protein VP39 101 338 IPR029063 -
Bisa01g1608 338 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 48 285 IPR030374 -
Bisa01g1608 338 FunFam Spermidine synthase 1 41 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g1608 Bisa-ChrBisa01 27550879 27555064 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g2289 11 46943607 46947546 Bisa01g1608 01 27550879 27555064 CCT
Bisa01g1608 01 27550879 27555064 Bisa01g1608 01 27550879 27555064 ECH