Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g1841 ATGGCCACCGTGGCAGCCACGTCACTGGTCCTCAGACCTCTCAGGCTTGAAATTAAGCGGAAGCTTGCCCAAAGATCAGAAAGAGTAAAATCCGTGGATCTGCATCCAACAGAACCATGGATTCTGGCAAGTTTATACTCAGGAACTGTATGTATTTGGAACTACCAATCTCAGACCATGGCCAAGTCTTTTGAGGTTACTGAGTTACCAGTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTGGTTGCTGGAGCGGATGATATGTTTATTCGTGTATATAATTACAACACAATGGACAAAGTTAAAGTGTTTGAGGCACATACAGATTACATTAGGTGTGTGGCAGTTCATCCTACCCTTCCTTATGTGCTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAGAAAGGCTGGGCTTGTACTCAGATATTTGAGGGGCACTCTCATTATGTAATGCAAGTGACTTTTAATCCTAAAGACACCAACACCTTTGCCAGTGCATCTCTTGATCGTACCATAAAGATTTGGAATCTTGGCTCTCCTGACCCAAATTTTACACTGGATGCCCACCAGAAAGGAGTAAACTGTGTTGATTACTTCACAGGTGGTGACAAACCTTATCTAATTACGGGTTCTGATGATCATACTGCTAAGGTATGGGATTATCAGACCAAAAGTTGTGTTCAGACTTTAGAAGGTCACACACACAATGTTTCTGCAGTTTGCTTTCATCCTGAACTTCCTATCATCATTACTGGTTCTGAGGATGGTACAGTACGCATATGGCACTCAACAACTTATAGGCTTGAGAACACATTGAATTATGGCCTTGAAAGAGTTTGGGCTATTGGATACATGAAAGGTTCACGTCGGGTTGTGATTGGCTATGATGAAGGAACTATCATGGTCAAACTTGGTCGTGAAGAACCTGTAGCCAGCATGGACAACAGTGGGAAAATTATTTGGGCTAAGCATAATGAAATTCAGACTGTCAATATAAAGAGTGTAGGAGCAGATGTGGAGGTGGTTGATGGAGAACGGTTACCTTTGGCTGTCAAGGAGTTGGGCACCTGCGATCTCTACCCACAGTTTTTAAAGCACAATCCAAATGGGAGGTTTGTTGTTGTATGTGGAGATGGTGAATACATTATATACACTGCATTGGCATGGAGAAATAGGTCATTTGGTTCAGCACTGGAGTTCGTTTGGTCTTCAGATGGAGAATATGCTGTCAGAGAAAGTACATCAAGGATTAAAATATTTAGCAAAAATTTCCAGGAAAAGAAGAGTATCCGACCAACATTTTCTGCTGAACGAATATTTGGTGGTACTTTATTGGCAATGTGCTCAAATGATTTTATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGCATTGATGTTAATGTGAAAAACCTCTACTGGGCTGATAGTGGTGATCTACTGACGATTGCAAGTGATACATCATTCTACATCATAAAGTACAATCGTGATATTGTTGCATCATATTTGGATAGTGGAAGACCTGTAGATGATCAAGGTGTGGAAGATGCCTTTGATGTCCTTCATGAAATGAATGAGCGTGTCAGAACTGGCATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGGCTTAATTACTGTGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAGGGTTTATTTGATAGACAAAGAGTTTAATGTTATGGGATACACACTGCTTTTAAGCTTGATTGAGTACAAGACTCTTGTGATGCGTGGTGATTTTGAAAGAGCCAATGAAGTTCTACCATCAATTCCTAAAGAGCATCATAACAGTGTGGCTCGTTTCCTGGAATCACGAGGGATGATAGAGGATGCTCTTGAAGTTGCTACTGATCCTGATTACAGATTTGACCTGGCCATTCAGCTTGGAAGATTAGAGGTTGCTAAGAGTATTGCCACAGAAGTGCATAGCGAGTCTAAATGGAAGCAGTTGGGAGAATTAGCTATGTCTACTGGCAAGTTAGAAATGGCTGAGGAGTGTTTAAAGCATGCAATGGATTTGAGTGGTTTGTTACTGCTTTATTCTTCTTTAGGAGATGCTGAAGGAATATCAAAACTTGCAGCCCTTGCTAAAGAGCAAGGGAAGAACAATGTCGCATTCCTTTGCTTATTTATGTTGGGTAAGCTTGAAGACTGCCTTCAATTGTTGGTAGAAAGCAATCGGATTCCTGAGGCCGCTTTAATGGCACGTTCTTATCTCCCAAGTAAGGTATCGGAAATAGTAGCAATTTGGAGAAAAGATCTCAACAAGGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAGGAATATCCTAATTTGTTTGAAGACTGGCAAGTTGCACTTGCTGTTGAATCTAAAGCGGTAGAAACAAGGGGCATTTACCCTCCTGCAGAAGAGTACATCAACTACGCTGATAAATCACATGTTACCCTTGTTGAAGCTTTCAGACACATGCAGATTGAAGCAGAGGAGGCAGAGCCTCTTGAGAATGGGGACTCAAATCATGAGCTGACTGAACAAAATGGAGAACACGGTACGGTGGAACATAATGGAGAGGAAGGAAGCCAAGAGGAGGCAGTTGTAGTGGATGCTGATTCTACAGATGGTGCAGTACTCGTTAATGGCAACGAGGGTGAAGAAGAGTGGGGTACGAATAATGAAGGAGCCCCGTCAGCCTAA 2787 0.4216 MATVAATSLVLRPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYMKGSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADVEVVDGERLPLAVKELGTCDLYPQFLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESTSRIKIFSKNFQEKKSIRPTFSAERIFGGTLLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLLTIASDTSFYIIKYNRDIVASYLDSGRPVDDQGVEDAFDVLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDFERANEVLPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFDLAIQLGRLEVAKSIATEVHSESKWKQLGELAMSTGKLEMAEECLKHAMDLSGLLLLYSSLGDAEGISKLAALAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQVALAVESKAVETRGIYPPAEEYINYADKSHVTLVEAFRHMQIEAEEAEPLENGDSNHELTEQNGEHGTVEHNGEEGSQEEAVVVDADSTDGAVLVNGNEGEEEWGTNNEGAPSA 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g1841 928 SUPERFAMILY WD40 repeat-like 13 308 IPR036322 GO:0005515
Bisa10g1841 928 PANTHER COATOMER 16 324 - -
Bisa10g1841 928 Pfam WD domain, G-beta repeat 102 138 IPR001680 GO:0005515
Bisa10g1841 928 Pfam WD domain, G-beta repeat 143 182 IPR001680 GO:0005515
Bisa10g1841 928 Pfam WD domain, G-beta repeat 231 267 IPR001680 GO:0005515
Bisa10g1841 928 Pfam WD domain, G-beta repeat 188 226 IPR001680 GO:0005515
Bisa10g1841 928 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 229 - -
Bisa10g1841 928 SMART WD40_4 229 268 IPR001680 GO:0005515
Bisa10g1841 928 SMART WD40_4 185 226 IPR001680 GO:0005515
Bisa10g1841 928 SMART WD40_4 142 182 IPR001680 GO:0005515
Bisa10g1841 928 SMART WD40_4 57 96 IPR001680 GO:0005515
Bisa10g1841 928 SMART WD40_4 15 54 IPR001680 GO:0005515
Bisa10g1841 928 SMART WD40_4 99 138 IPR001680 GO:0005515
Bisa10g1841 928 CDD WD40 28 308 - -
Bisa10g1841 928 MobiDBLite consensus disorder prediction 861 892 - -
Bisa10g1841 928 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 236 267 - -
Bisa10g1841 928 FunFam Coatomer subunit beta 601 809 - -
Bisa10g1841 928 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 149 183 - -
Bisa10g1841 928 ProSiteProfiles Trp-Asp (WD) repeats profile. 236 277 IPR001680 GO:0005515
Bisa10g1841 928 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 235 IPR001680 GO:0005515
Bisa10g1841 928 ProSiteProfiles Trp-Asp (WD) repeats profile. 149 191 IPR001680 GO:0005515
Bisa10g1841 928 Pfam Coatomer WD associated region 330 774 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Bisa10g1841 928 ProSiteProfiles Trp-Asp (WD) repeats profile. 106 138 IPR001680 GO:0005515
Bisa10g1841 928 MobiDBLite consensus disorder prediction 861 928 - -
Bisa10g1841 928 Gene3D - 601 809 - -
Bisa10g1841 928 PRINTS G protein beta WD-40 repeat signature 169 183 IPR020472 -
Bisa10g1841 928 PRINTS G protein beta WD-40 repeat signature 213 227 IPR020472 -
Bisa10g1841 928 PRINTS G protein beta WD-40 repeat signature 255 269 IPR020472 -
Bisa10g1841 928 PIRSF Beta'-COP 13 899 IPR016453 -
Bisa10g1841 928 CDD Coatomer_WDAD_beta-like 315 790 - -
Bisa10g1841 928 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 106 138 - -
Bisa10g1841 928 FunFam Coatomer subunit beta 22 311 - -
Bisa10g1841 928 SUPERFAMILY NHL repeat 231 503 - -
Bisa10g1841 928 Gene3D - 22 311 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g1841 Bisa-ChrBisa10 50420412 50430815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g1841 26 378 Miscellaneous Gene Families AT5G08390 19.890 2.90e-10 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa10g1841 10 50420412 50430815 Bisa06g1964 06 62727280 62737909 CCT
Bisa10g1841 10 50420412 50430815 Bisa10g1841 10 50420412 50430815 ECH