Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa10g0116 ATGTCAGCCATGGTTGCAGCAGAAGTAATGTCCGAGACAACTCTTCAGGGAGTTCCTATGATCTCAAGGGAAAGGGACAACTCTTTCCCTTCATCCAGAAGATTGGAAGGCAAAGTCGCCATAGTGACTGGCGGAGCCAGAGGAATAGGGGAAGCAACAGTGAGGGTTTTTGTGAAGCAAGGAGCAAAAGTCGTCATTGCAGATGTTGAGGACGCACTGGGATCCGTACTCGCAGAGACATTGTCCCCTTTTGCAACCTTTGTCCATTGTGACGTCAGCTCAGAAGATGACATCGAAAATCTCGTGAACTTTACCGTCTCTCGATACGGCCAGCTCGACATAATTTTCAACAATGCCGGAATTTTGGGAAACCAATCGAAAAATAAGAGCATTTTGAATTTTGATGCTGACGAGTTTGACAACGTGATGCGTGTGAACGTTAAGGGAGTAGCCCTAGGGATGAAGCACGCGGCCAGGGTGATGATCTCGAGGCAATCAGGTTGCATAATCTCCACGTGTAGCGTGGCGGGAGTGATGGGCGGGCTTGGGCCTCATGCCTATACGGCCTCAAAGCATGCCATAGTTGGGTTAACAAAGAATACGGCTTGCGAGTTGGGAAAATACGGGATTAGGGTTAATTGTATATCGCCATTTGGAGTGGCAACTTCCATGCTTGTGAACGCGTGGAGGCATACCGATGATGATGACGACGAAGAAGCTAAGATCGTCAATTATGGCTTGCCTATGGAAGAGGAAGTGGTGAAAATGGAGGAATTTGTAAGAGGTTTGGCCAATTTAAAAGGGACAACATTGAAACCTAAGGATATTGCAGAGGCAGCACTTTATCTTGCAAGTGATGAATCTAAGTATGTGAGTGGTCATAACCTTGTTGTGGATGGTGGAGTCACATCCTCAAGAAATTGTGTTGGATTGTAA 936 0.4669 MSAMVAAEVMSETTLQGVPMISRERDNSFPSSRRLEGKVAIVTGGARGIGEATVRVFVKQGAKVVIADVEDALGSVLAETLSPFATFVHCDVSSEDDIENLVNFTVSRYGQLDIIFNNAGILGNQSKNKSILNFDADEFDNVMRVNVKGVALGMKHAARVMISRQSGCIISTCSVAGVMGGLGPHAYTASKHAIVGLTKNTACELGKYGIRVNCISPFGVATSMLVNAWRHTDDDDDEEAKIVNYGLPMEEEVVKMEEFVRGLANLKGTTLKPKDIAEAALYLASDESKYVSGHNLVVDGGVTSSRNCVGL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa10g0116 311 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Bisa10g0116 311 PRINTS Glucose/ribitol dehydrogenase family signature 187 206 IPR002347 -
Bisa10g0116 311 PRINTS Glucose/ribitol dehydrogenase family signature 161 177 IPR002347 -
Bisa10g0116 311 PRINTS Glucose/ribitol dehydrogenase family signature 110 121 IPR002347 -
Bisa10g0116 311 PRINTS Glucose/ribitol dehydrogenase family signature 208 225 IPR002347 -
Bisa10g0116 311 PRINTS Glucose/ribitol dehydrogenase family signature 266 286 IPR002347 -
Bisa10g0116 311 FunFam Short-chain dehydrogenase reductase 24 307 - -
Bisa10g0116 311 Pfam Enoyl-(Acyl carrier protein) reductase 255 303 - -
Bisa10g0116 311 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 31 306 - -
Bisa10g0116 311 Gene3D - 25 309 - -
Bisa10g0116 311 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 36 303 IPR036291 -
Bisa10g0116 311 Pfam short chain dehydrogenase 38 229 IPR002347 -
Bisa10g0116 311 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 110 121 IPR002347 -
Bisa10g0116 311 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 187 206 IPR002347 -
Bisa10g0116 311 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 175 IPR002347 -
Bisa10g0116 311 CDD secoisolariciresinol-DH_like_SDR_c 34 303 IPR045309 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa10g0116 Bisa-ChrBisa10 1878692 1880063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa10g0116 35 303 Acyl Lipid Metabolism Gene Families AT1G63380 33.214 2.32e-26 103
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa06g0092 06 1738074 1739688 Bisa10g0116 10 1878692 1880063 CCT
Bisa10g0116 10 1878692 1880063 Bisa10g0116 10 1878692 1880063 ECH