Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1924 ATGGAATTCCCCCGGTCTTATAGTGGCTCTTCGTCTTCTTCCTCTAACCATCTTCAAACTAGACTAACCTCTCTGTCTTCACAACGCAGCCTCGCTTCGGTTCCCTCCCTTAACTCACAGTCTCACCCCCGTGACTCCACCACCTATCACCAGTGCCTTGCGACTCTCAAGGGCCACACATCCTACGTATCCTGTATAACACTTGCTGGGAAATTCCTCTATATAGGATCATCGGACAGAGAAATCAGGTCCTGGAATCATGCCCCTTTTCACTCGGAAATATTCGATCCTCAACATTCAAATTCAATCACTACCATGGTAACAGCAGGAAAAGGTGCAGTGAAGTCCCTAATAGTTCAATCTGATAAGCTTTTCAGTGCTCACCAAGACTACAAAATCAGGGTATGGAAGATTAGCAGCTACGAACCTGACCACCAGAAGTACACCCATTTAGCTACCCTTCCTACGTTTGGCGACAGAGCCTCGAAGATTTTGAACCCCAAGAACCATGTTCAGATTAGAAGGCACAAAAAATGCACCTGGGTTCACCATGTCGATACAGTCTCCGCTCTGGCCTTGTCCAGGGACGAGACCTTGCTTTACTCAGTTTCATGGGACCGGACAATCAAAATTTGGCGAACCAGAGACTTCACCTGTTTAGAATCAGTGAACAACGCACATGATGATGCTATAAATGCCCTTGCAGTTTCTGACGATGGTTACGTTTACACTGGATCAGCAGATAAGACAATTAAAGTGTGGAAGAAAGGCGAGGGAGAGAAGAAACATAGTCTGCTTGATACGTTAGAGAAACACAAGTCGGGGATAAATGCGTTGGCTCTGAGCAGTGATGGATCTCTGCTGTATTCTGGTGCTTGTGACAGATCTATATTGGTTTGGGAGAAGGACGAAGAAGATGGGAAAATGGTGGTGGTGGGGGCGCTCAGGGGCCACACCAAGTCCATATTATGCTTAGCCGTGGTCTCGGATTTGGTGTGTAGTGGCTCTGCAGATAAAACAATAAGAATTTGGAGAGGTGTTAATAACGATTACTCTTGTCTAGCAGTTTTAGAGGGGCATACGGGTCCGGTTAAGTGCCTAGCTGCGGTTGTTGATCGTTGCAATCAGTCCGAATCATCCTTTCTAGTCTATAGTGGCAGTTTGGACTGTGACATTAAGATGTGGCAGATCTTTGTTCCTCTTCTCTAG 1209 0.4632 MEFPRSYSGSSSSSSNHLQTRLTSLSSQRSLASVPSLNSQSHPRDSTTYHQCLATLKGHTSYVSCITLAGKFLYIGSSDREIRSWNHAPFHSEIFDPQHSNSITTMVTAGKGAVKSLIVQSDKLFSAHQDYKIRVWKISSYEPDHQKYTHLATLPTFGDRASKILNPKNHVQIRRHKKCTWVHHVDTVSALALSRDETLLYSVSWDRTIKIWRTRDFTCLESVNNAHDDAINALAVSDDGYVYTGSADKTIKVWKKGEGEKKHSLLDTLEKHKSGINALALSSDGSLLYSGACDRSILVWEKDEEDGKMVVVGALRGHTKSILCLAVVSDLVCSGSADKTIRIWRGVNNDYSCLAVLEGHTGPVKCLAAVVDRCNQSESSFLVYSGSLDCDIKMWQIFVPLL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1924 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 222 IPR001680 GO:0005515
Bisa08g1924 402 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 13 397 IPR045182 -
Bisa08g1924 402 MobiDBLite consensus disorder prediction 1 20 - -
Bisa08g1924 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 301 - -
Bisa08g1924 402 CDD WD40 52 396 - -
Bisa08g1924 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 264 IPR001680 GO:0005515
Bisa08g1924 402 Pfam WD domain, G-beta repeat 182 212 IPR001680 GO:0005515
Bisa08g1924 402 Pfam WD domain, G-beta repeat 352 395 IPR001680 GO:0005515
Bisa08g1924 402 Pfam WD domain, G-beta repeat 265 300 IPR001680 GO:0005515
Bisa08g1924 402 Pfam WD domain, G-beta repeat 51 86 IPR001680 GO:0005515
Bisa08g1924 402 Pfam WD domain, G-beta repeat 313 344 IPR001680 GO:0005515
Bisa08g1924 402 Pfam WD domain, G-beta repeat 225 255 IPR001680 GO:0005515
Bisa08g1924 402 SMART WD40_4 100 137 IPR001680 GO:0005515
Bisa08g1924 402 SMART WD40_4 262 301 IPR001680 GO:0005515
Bisa08g1924 402 SMART WD40_4 174 213 IPR001680 GO:0005515
Bisa08g1924 402 SMART WD40_4 308 345 IPR001680 GO:0005515
Bisa08g1924 402 SMART WD40_4 350 396 IPR001680 GO:0005515
Bisa08g1924 402 SMART WD40_4 216 255 IPR001680 GO:0005515
Bisa08g1924 402 SMART WD40_4 49 86 IPR001680 GO:0005515
Bisa08g1924 402 SUPERFAMILY WD40 repeat-like 51 397 IPR036322 GO:0005515
Bisa08g1924 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 86 IPR001680 GO:0005515
Bisa08g1924 402 FunFam BnaA09g28200D protein 171 259 - -
Bisa08g1924 402 Gene3D - 261 399 IPR015943 GO:0005515
Bisa08g1924 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 212 - -
Bisa08g1924 402 Gene3D - 151 260 IPR015943 GO:0005515
Bisa08g1924 402 Gene3D - 5 147 IPR015943 GO:0005515
Bisa08g1924 402 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Bisa08g1924 402 PRINTS G protein beta WD-40 repeat signature 242 256 IPR020472 -
Bisa08g1924 402 PRINTS G protein beta WD-40 repeat signature 200 214 IPR020472 -
Bisa08g1924 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 344 - -
Bisa08g1924 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 224 255 - -
Bisa08g1924 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 301 IPR001680 GO:0005515
Bisa08g1924 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 344 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1924 Bisa-ChrBisa08 46259136 46260344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1924 178 397 Acyl Lipid Metabolism Gene Families AT3G18860 26.293 1.24e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g1924 08 46259136 46260344 Bisa02g1345 02 22969263 22970471 CCT
Bisa08g1924 08 46259136 46260344 Bisa02g1345 02 22969263 22970471 ECH
Bisa08g1924 08 46259136 46260344 Bisa08g1924 08 46259136 46260344 ECH