Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1345 ATGGAATACCACCGATCTTACAGTGTCTCTTCTTCTTCATCCACTCCCTCAAACTACCTTCAAACATGTCCAAAGTCTCTGTCTTCACAACGCAGCCTAGCAGCCATCCCTTCTCTGACCTCACGCTCTCATCACCACCTTCAAAACCATCCTTCCTCCACCTACCACCAATGCCTCAAAACTATCAAAAACCACACATCCTATACATCCTCTCTTGCCCTCTCTGGCAAATTCCTCCACACAGGTTCATCAGACAGAGAAATCAGATCATGGGATCGTACCCTTTTCCCCTCTGAACTTAATCCTCAAGATTTCTTGACCAACATGGCAGTTTCAGGAAAGGGTGCAGTGAAATCCATAGTAGTTCAATCAGATAAGAAGCTCTTCAGTGCTCACCAAGACCACAAAATCCGAGTCTGGAAGGTCGACCACCAGAAGTGCACGTGTGTGGCCACGCTTCCAACGTTGGGGGATCGAGCTTCCAAGATTCTGATCCCCAAGAACCATGTCCAGATCAGGAGGCACAAGAGATGCACGTGGGTTCACCACGTGGACACTGTCTCTGCTCTGGCCCTGTCCAAAGACCAGACCTTGCTGTACTCTGTTTCATGGGACAGGACAATCAAAATCTGGCGAACCAGAGACTTCACCTGTTTGGAATCAATAAGCAACGCACACGACGATGCCATAAATGCTGTTACAATCTCCAACGATGGTTATGTCTACACAGGATCAGCAGATAAGAGAATAAAGGTGTGGAAGAAAAGGGAAGGAGAAAAGAAGCATGCTTTGGTGGATACCTTAGAGAAACACAATTCTGGGGTTAATGCTTTGGCTCTGAGCAATGATGGGTCTGTGTTATATTCAGGTGCATGTGACAGATCGATACTGGTCTGGGAGAAGGTTGATGAAGGAGATGGGAAAATGGGGGTGGTGGGGGCGTTGAGAGGGCATAGAATGTCTATACTGTGCTTGAGTGTGGTGTGTGATTTGGTGTGTAGTGGTTCTGCAGATAAAACGATTCGTATTTGGAGAGGGGTTGAGAGAGATTACTTTTGTTTGGCAGTTTTGGAAGGGCATAGAGGAGCGATTAAGTGTATATCTGCGGCGGTTGATCGTTATGATTCGTCTGAAGCTTCTTTTGTGGTGTACAGTGGCAGTTTGGACTCTGAGATCAAGGTGTGGAAGGTCGTTGTTCCTGTTCTTTAG 1209 0.469 MEYHRSYSVSSSSSTPSNYLQTCPKSLSSQRSLAAIPSLTSRSHHHLQNHPSSTYHQCLKTIKNHTSYTSSLALSGKFLHTGSSDREIRSWDRTLFPSELNPQDFLTNMAVSGKGAVKSIVVQSDKKLFSAHQDHKIRVWKVDHQKCTCVATLPTLGDRASKILIPKNHVQIRRHKRCTWVHHVDTVSALALSKDQTLLYSVSWDRTIKIWRTRDFTCLESISNAHDDAINAVTISNDGYVYTGSADKRIKVWKKREGEKKHALVDTLEKHNSGVNALALSNDGSVLYSGACDRSILVWEKVDEGDGKMGVVGALRGHRMSILCLSVVCDLVCSGSADKTIRIWRGVERDYFCLAVLEGHRGAIKCISAAVDRYDSSEASFVVYSGSLDSEIKVWKVVVPVL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1345 402 SMART WD40_4 55 92 IPR001680 GO:0005515
Bisa02g1345 402 SMART WD40_4 350 396 IPR001680 GO:0005515
Bisa02g1345 402 SMART WD40_4 102 141 IPR001680 GO:0005515
Bisa02g1345 402 SMART WD40_4 215 254 IPR001680 GO:0005515
Bisa02g1345 402 SMART WD40_4 173 212 IPR001680 GO:0005515
Bisa02g1345 402 SMART WD40_4 308 345 IPR001680 GO:0005515
Bisa02g1345 402 SMART WD40_4 261 300 IPR001680 GO:0005515
Bisa02g1345 402 CDD WD40 58 396 - -
Bisa02g1345 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 180 211 - -
Bisa02g1345 402 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 13 398 IPR045182 -
Bisa02g1345 402 Gene3D - 167 399 IPR015943 GO:0005515
Bisa02g1345 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 263 IPR001680 GO:0005515
Bisa02g1345 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 221 IPR001680 GO:0005515
Bisa02g1345 402 FunFam BnaA09g28200D protein 170 258 - -
Bisa02g1345 402 MobiDBLite consensus disorder prediction 1 21 - -
Bisa02g1345 402 Gene3D - 45 163 IPR015943 GO:0005515
Bisa02g1345 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 344 IPR001680 GO:0005515
Bisa02g1345 402 Pfam WD domain, G-beta repeat 218 254 IPR001680 GO:0005515
Bisa02g1345 402 Pfam WD domain, G-beta repeat 265 299 IPR001680 GO:0005515
Bisa02g1345 402 Pfam WD domain, G-beta repeat 313 344 IPR001680 GO:0005515
Bisa02g1345 402 Pfam WD domain, G-beta repeat 353 396 IPR001680 GO:0005515
Bisa02g1345 402 Pfam WD domain, G-beta repeat 181 211 IPR001680 GO:0005515
Bisa02g1345 402 SUPERFAMILY WD40 repeat-like 57 397 IPR036322 GO:0005515
Bisa02g1345 402 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Bisa02g1345 402 PRINTS G protein beta WD-40 repeat signature 199 213 IPR020472 -
Bisa02g1345 402 PRINTS G protein beta WD-40 repeat signature 383 397 IPR020472 -
Bisa02g1345 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 92 IPR001680 GO:0005515
Bisa02g1345 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 223 254 - -
Bisa02g1345 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 300 IPR001680 GO:0005515
Bisa02g1345 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1345 Bisa-ChrBisa02 22969263 22970471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1345 177 402 Acyl Lipid Metabolism Gene Families AT3G18860 24.370 4.14e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g1924 08 46259136 46260344 Bisa02g1345 02 22969263 22970471 CCT
Bisa08g1924 08 46259136 46260344 Bisa02g1345 02 22969263 22970471 ECH
Bisa02g1345 02 22969263 22970471 Bisa02g1345 02 22969263 22970471 ECH