Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g2356 ATGACAATGGCCCTCCAAAGAGACCTCCTTTCGTTCATCTTCATCACCATCATTCCTTTTGTTGCTTCGCAAGAGGACCCACTAAACACATATGTTGGTGATTCATCTTTCCATATTGACGATGGCGGGACCATATTCAAGAACTTGATCCACCAAAGCACACAAGTTTCGAGCTTGAAGAGGTATAAAAAGTTGGGTGTCGCTTCTCCTTCGATTCTAAATGTTAATGTCAATGATTATGGAGCTAAAGGAGATGGCAGAAGCGATGACACAGAGGCATTTAAGAAGGCTTGGCAAGTGTCATGTTCTTCTGGGAAAGCAGTAAATTTTTTGGTGCCTCCCAATAGTAATTATCTACTCAAGCCAATCAGATTCTCTGGGCCATGCAAATCTCACATTACAATCCAGATTTCTGGGACTCTTGAAGCATCACAGAACCCATCAGACTACAGCCAAGACACCGAACACTGGCTTATGTTTAACACTGTTCAGAGACTAACAGTTCAAGGAGGTGGAACCATCAATGGCAATGGAAACATATGGTGGCAAAACTCTTGCAAAACCAACCCAAAACTTTCTTGCAAGAATGCCCCAACGGCTGTGACTTTCTACAAGTGCAACGAGTTGATAGTGGAGAAGTTGACGATAAAAAATGCCCAACAAATCCATGTTAATATCCAGGAATCCATGAACGTTACGGTTTCTGGTGTCACAGTGAGCGCACCAGAGGATAGCCCTAACACTGATGGAATTCATGTCACCAAAACCCAAAACATCCAGATCTCAAACTCCCTCATAGCAACTGGAGATGATTGTATATCAATTGAAAGTGGGACCCAGAATTTACTGGCTACAGGTATAACCTGTGGACCAGGCCATGGTATCAGTATCGGCAGCTTAGGAGAGACAGGATCCAGAGAATTTGTTTCAGGAGTAACAATCAATGGAGCCAAGCTTTCTAGAACTACAAATGGAGTCAGAATTAAGACATGGCCGGCAGGGTTAGGAAGCGCAAGCAACATCAAGTTTCAAAATATTCAAATGGACGGTGTGACCAACCCCATAATAATAGACCAGAACTACTGCGACCAGAAAACTCCATGCAATCAACAGAACTCGGGAGTTAAAATCAGAAACGTGTTGTACGAGAACATCAAAGGAACGAGTGCTTCTGAGGTTGCTGTGAGCTTGGGCTGCAGTGCGAGGCTTCTGTGTGAAGGGATTGTGTTGAGGAACATAGAGCTGCGACGTCAAGGAGGAGAAGCTTCCACAGCTTCGTGTCAAAGTGCTATGTTGTCTTACGTAGGAGACGTTTCCCCACGTTGCCCTTAG 1332 0.4429 MTMALQRDLLSFIFITIIPFVASQEDPLNTYVGDSSFHIDDGGTIFKNLIHQSTQVSSLKRYKKLGVASPSILNVNVNDYGAKGDGRSDDTEAFKKAWQVSCSSGKAVNFLVPPNSNYLLKPIRFSGPCKSHITIQISGTLEASQNPSDYSQDTEHWLMFNTVQRLTVQGGGTINGNGNIWWQNSCKTNPKLSCKNAPTAVTFYKCNELIVEKLTIKNAQQIHVNIQESMNVTVSGVTVSAPEDSPNTDGIHVTKTQNIQISNSLIATGDDCISIESGTQNLLATGITCGPGHGISIGSLGETGSREFVSGVTINGAKLSRTTNGVRIKTWPAGLGSASNIKFQNIQMDGVTNPIIIDQNYCDQKTPCNQQNSGVKIRNVLYENIKGTSASEVAVSLGCSARLLCEGIVLRNIELRRQGGEASTASCQSAMLSYVGDVSPRCP 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g2356 443 FunFam Polygalacturonase QRT2 61 443 - -
Bisa03g2356 443 SUPERFAMILY Pectin lyase-like 74 442 IPR011050 -
Bisa03g2356 443 PANTHER - 75 427 - -
Bisa03g2356 443 SMART pbh1 256 277 IPR006626 -
Bisa03g2356 443 SMART pbh1 229 255 IPR006626 -
Bisa03g2356 443 SMART pbh1 309 330 IPR006626 -
Bisa03g2356 443 SMART pbh1 338 359 IPR006626 -
Bisa03g2356 443 SMART pbh1 372 412 IPR006626 -
Bisa03g2356 443 Pfam Glycosyl hydrolases family 28 102 429 IPR000743 GO:0004650|GO:0005975
Bisa03g2356 443 ProSitePatterns Polygalacturonase active site. 286 299 IPR000743 GO:0004650|GO:0005975
Bisa03g2356 443 Gene3D - 68 438 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g2356 Bisa-ChrBisa03 34602038 34605224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g2356 75 442 Glycoside Hydrolase AT3G57510 56.216 5.68e-146 421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa07g3091 07 65047700 65051337 Bisa03g2356 03 34602038 34605224 CCT
Bisa03g2356 03 34602038 34605224 Bisa03g2356 03 34602038 34605224 ECH