Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g1267 ATGAAGGCAACAATAAGGTACTTAGCTGGAATTGCAGGCCCTAGTGGCTTTGGCTCTAAGTCCACTGCTGAGCAAGTCACTCAACATTCTTCTTCCATGCTTCCTTCCCACCTCACTGCTCTCATTACTGGGGCGACATCTGGGATTGGAGGTGAAACGGCAAGAGTGTTAGCGAAGAGAGGAGTGAGAGTGGTGATTGGTGCGAGGGACCTGAAGAAGGGAAGGGAAGTGAGAGAGGATATCCTCAAAGACACTCCAAATGCCGAGGTTGTCTTGTTGGAGATCGACCTCAGCTCTTTTGCTTCTGTTCAGAGATTCTGTCTTGAGTTCTTGGCTCTTCAGATTCCCCTTAACATTCTCATAAACAATGCTGGGGTGTACTCTCAGAACTTGGAGTTCTCCGAAGACAAAATCGAGATGACATTTGCTACAAATTACTTAGGGCATTTTTTGTTGACGGAAATGCTAACGGAGAAAATGATAGAAACGGCAGAGAAAACGGGTACTGAAGGAAGAATAATCAACTTGTCTTCGATGATCCATGGCTGGGTGAAAAGTGACGCGTTTCAATTCAAGGACATTCTCGTGGGAAAAAACTATAATGGCACACGTGCGTATGCTCAGTCAAAATTGGCTTGTATTTTGCATGCCAAGGAATTGGCCAAACAGCTAAAGGCACGAAACGCAAGAGTGACTATCAATGCGGTCCATCCGGGCATTGTGAAGACGGGAATTATGAAAGCTCATAAGGGTTTGATAACAGATTCCTTGTTTTTCATCGCATCCAAGTTACTCAAATCCACATCTCAGGGAGCAGCAACGACGTGTTACGTTGCCCTAAGCCCACAAACAGAAGGAGTAAGCGGAAAATACTTCATGGATTGCAATGAGAGTAACTGTTCGAGTTTAGCAAATGACGAGGCTGAAGCTCATAAGCTATGGATCAATACACGTGCCCTGCTTCACAAACGATTACGTCAACCATCAATTTGA 993 0.4502 MKATIRYLAGIAGPSGFGSKSTAEQVTQHSSSMLPSHLTALITGATSGIGGETARVLAKRGVRVVIGARDLKKGREVREDILKDTPNAEVVLLEIDLSSFASVQRFCLEFLALQIPLNILINNAGVYSQNLEFSEDKIEMTFATNYLGHFLLTEMLTEKMIETAEKTGTEGRIINLSSMIHGWVKSDAFQFKDILVGKNYNGTRAYAQSKLACILHAKELAKQLKARNARVTINAVHPGIVKTGIMKAHKGLITDSLFFIASKLLKSTSQGAATTCYVALSPQTEGVSGKYFMDCNESNCSSLANDEAEAHKLWINTRALLHKRLRQPSI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g1267 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Bisa02g1267 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Bisa02g1267 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Bisa02g1267 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Bisa02g1267 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Bisa02g1267 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Bisa02g1267 330 PANTHER RETINOL DEHYDROGENASE 14 319 - -
Bisa02g1267 330 Gene3D - 35 326 - -
Bisa02g1267 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 298 IPR036291 -
Bisa02g1267 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Bisa02g1267 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Bisa02g1267 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Bisa02g1267 330 Pfam short chain dehydrogenase 199 248 IPR002347 -
Bisa02g1267 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g1267 Bisa-ChrBisa02 21548594 21554892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g1267 41 248 Acyl Lipid Metabolism Gene Families AT3G55290 30.233 2.11e-13 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g2007 08 48211154 48215104 Bisa02g1267 02 21548594 21554892 CCT
Bisa02g1267 02 21548594 21554892 Bisa02g1267 02 21548594 21554892 ECH