LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa01g4006	ATGTCCGGCCCGCTGGATCGTTTCGCTAGACCTTGCTTTGAGGGATTCTCTGGAAGTGATGAGAAAAGAGAAAGGAGATCTGATTTTGAGAACTCTGAGGATGAAAGACGGACAAGGATTGGTTCTCTGAAAAAGAAAGCAATTAATGCGTCTACCAAATTCAAGCATTCTCTGAAGAAAAAGAGTGGCAGGAGAAAAGTTAGCTCAGTTTCCATTGAGGATGTTCGGGATGTTGAGGAACTGCGGGTTGTTGATGAATTTCGGCAATCACTGATTATGGATGAACTGCTTCCAGAAAAACATGATGATTACCATATGATGTTAAGATTCCTAAAAGCAAGGAAATTTGACATTGAAAAAGCCAAGCATATGTGGGCTGAAATGTTGAGATGGAGGAAGGATTTTGGTGCTGACACTATTATGGAGGATTTTGAGTTCAAGGAATTACCTGATGTTGTGAAATATTACCCTCATGGCCATCATGGTGTTGATAAGGAGGGAAGGCCGGTTTACATTGAAAGACTTGGAAAGGTTGATCCACACAAACTTATGCAAGTTACAACTTTGGATAGATATGTAAAGTACCATGTACAAGAGTTTGAAAAAGCTTTTGCAATAAAGTTCCCTGCTTGCGCAATTGCTGCAAAGAGGCATATAGATTCAAGCACCACAATCTTAGATGTGCAAGGCGTGGGCTTGAAGAACTTCACAAAGTCTGCCCGGGAACTCATTTTGCGATTGCAAAAGATTGATGGAGACAATTACCCTGAGACCCTCTGCCAAATGTTTATTATAAATGCTGGCCCTGGATTTAGGCTATTGTGGAGCACTGTCAAGTCTTTTATTGATCCCAAAACAACTTCAAAGATTCATGTTCTTGGAAACAAGTACCAGAGCAAATTGCTTGAAATAATTGATGCTAGTGAGTTGCCTGAATTTTTGGGAGGCACCTGCACTTGTGCGGATCAGGGAGGTTGCCTCAGATCTGGTAAAGGGCCTTGGAAGCACCCTGAAATATTGAAGATGGTTCTTAGAGGTGAAGCACAAGGAGCAAGGCAGGTAGTGAAAGTTCTAAACAGTGAAGGGAAGGTTGTTGCATACGCCAAACCTCAATACCCAATGGTAAAAGGCAGTGATACATCCACTGCTGAATCAGGGTCCGAAGCAGAAGAAGTTGCTTCTCCAAAAGCAATGAAGAGTTATTCACATCTTAGGTTGACCCCTGTTCGTGAGGAAGCTAAGGTGGTTGGACAGACAAGCTATGCTGGTAGGTTATCACGGTACGATGAATATGTTCCAATGGTGGACAAAGCTGTTGATGCTATCTGGAAGAAGCAAGCATCTCTCCAGAGGTCTAGCACTTCTAAAGGAGTCCCTTCCTTTACTGACGTTCAGAATGCTCCAGAAGGGATTCAAGCTCAGATTTGGGTAGCCTTGAGTGTCTTCTTTTTTACCCTTCTCACTCTCTTCCGTTCAGTTGCATGTCATGTGACCAAGAAGCTTCCCGCAATATCATCCGGTGACGGTCAGAGTACTTCAGAACCAACTCTTGATATGACAAAAAAGGACTGTCATCCTCCTTCATCAAGTTTAGCATGTACAGAAGCATATCAGCTTTCCTTCATGCTAAAGAAGTTGGGTGAGCTTGAAAAGAAGGTTGACACACTCCAATCTAGGCCATCCGAGATGCCTAATGAGAAAGAGGAATTGTTAAATGCTGCTGTCTGCCGTGTGGATGCTTTGGAAGCAGAGTTAATTGCTACTAAAAAGGCTCTCTATGAAGCTTTGATGAAGCAAGAGGAACTGCTTGCCTACATTGATAGGCAAGAAGCTGCGAAGTTAAGGAAAAAGAAGTTTTGCTGGTGA	1866	0.4282	MSGPLDRFARPCFEGFSGSDEKRERRSDFENSEDERRTRIGSLKKKAINASTKFKHSLKKKSGRRKVSSVSIEDVRDVEELRVVDEFRQSLIMDELLPEKHDDYHMMLRFLKARKFDIEKAKHMWAEMLRWRKDFGADTIMEDFEFKELPDVVKYYPHGHHGVDKEGRPVYIERLGKVDPHKLMQVTTLDRYVKYHVQEFEKAFAIKFPACAIAAKRHIDSSTTILDVQGVGLKNFTKSARELILRLQKIDGDNYPETLCQMFIINAGPGFRLLWSTVKSFIDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADQGGCLRSGKGPWKHPEILKMVLRGEAQGARQVVKVLNSEGKVVAYAKPQYPMVKGSDTSTAESGSEAEEVASPKAMKSYSHLRLTPVREEAKVVGQTSYAGRLSRYDEYVPMVDKAVDAIWKKQASLQRSSTSKGVPSFTDVQNAPEGIQAQIWVALSVFFFTLLTLFRSVACHVTKKLPAISSGDGQSTSEPTLDMTKKDCHPPSSSLACTEAYQLSFMLKKLGELEKKVDTLQSRPSEMPNEKEELLNAAVCRVDALEAELIATKKALYEALMKQEELLAYIDRQEAAKLRKKKFCW	621

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa01g4006	621	SUPERFAMILY	CRAL/TRIO N-terminal domain	78	144	IPR036273	-
	Bisa01g4006	621	MobiDBLite	consensus disorder prediction	1	42	-	-
	Bisa01g4006	621	MobiDBLite	consensus disorder prediction	504	523	-	-
	Bisa01g4006	621	FunFam	SEC14 cytosolic factor	136	348	-	-
	Bisa01g4006	621	Gene3D	-	45	135	-	-
	Bisa01g4006	621	SMART	CRAL_TRIO_N_2	103	128	IPR011074	-
	Bisa01g4006	621	SUPERFAMILY	CRAL/TRIO domain	149	342	IPR036865	-
	Bisa01g4006	621	CDD	SEC14	149	317	IPR001251	-
	Bisa01g4006	621	PRINTS	Cellular retinaldehyde-binding protein signature	275	294	-	-
	Bisa01g4006	621	PRINTS	Cellular retinaldehyde-binding protein signature	106	128	-	-
	Bisa01g4006	621	PRINTS	Cellular retinaldehyde-binding protein signature	308	317	-	-
	Bisa01g4006	621	Gene3D	-	136	347	IPR036865	-
	Bisa01g4006	621	PANTHER	CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED	24	609	-	-
	Bisa01g4006	621	ProSiteProfiles	CRAL-TRIO lipid binding domain profile.	148	322	IPR001251	-
	Bisa01g4006	621	Pfam	CRAL/TRIO, N-terminal domain	99	126	IPR011074	-
	Bisa01g4006	621	Coils	Coil	539	559	-	-
	Bisa01g4006	621	MobiDBLite	consensus disorder prediction	16	42	-	-
	Bisa01g4006	621	SMART	sec14_4	148	319	IPR001251	-
	Bisa01g4006	621	Pfam	CRAL/TRIO domain	155	316	IPR001251	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa01g4006	Bisa-ChrBisa01	96417011	96421577	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa01g4006	84	313	Acyl Lipid Metabolism Gene Families	AT5G47730	30.081	9.76e-22	95.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bisa01g4006	01	96417011	96421577	Bisa01g4006	01	96417011	96421577	ECH
	Bisa01g4006	01	96417011	96421577	Bisa01g4005	01	96408796	96415263	ECH