Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bach8g01143 | ATGGCTCTTCAGAGGCATCTTCTGCCATTCTTCTTCATTGTTATTTCTTTTGTTTCTTGTTATTGCACTGGTTTGCTACAAGAGAACCCACTTTCTCTGAACGTTGATGATGGTGGGACATTCAAGGACTTGATCAAACAGAGAACAGATGTTTTGAGCTTGAAGAGTTTTGACAGGTTGGGTAGCAAAGCTTCTTCACTTACAACGGTCAATGTCAATGATTATGGAGCTAAAGGGGATGGTAAAACTGATGATACAGAGGCATTTGAGAAGGTTTGGGAAGTAGCATGTTCCTCTAAGGAATCAGTTAAGCTTGTGGTTCCTGAGCAGAGTTATCTGCTGATGCCAATCAGATTCTCTGGCCCATGCAAATCTACCATTGGCATTCAGATTTCTGGCACCCTTGAAGCATCAGCTGACCCATCAGATTACAACAAAGAACACAATCACTGGATTGTTTTTGATAGTGTTGAAAGTTTATCAGTTCAAGGTGGTGGAACCATTAATGGAAATGGGAACATATGGTGGGAAAACTCATGCAAAAGGAACAAAAATAATGCTGTGACTTTCTACAAGTGTGAGGATTTGTTAGTTCAGGACTTGACCATAAAAAATTCCCAGCAAATCCATGTTTCTTTCCAGGACAGCACCAACGTTAAAGTTTCTGGTCTCACAGTGACTGCACCTGGGGATAGCCCTAATACTGATGGAATTCATGTCACAAATACTCAAAACATCCAAATCTCAAGCTCGGTTATTGGAACTGGCGATGATTGTATATCAATTGTAAGTGGATCCACGAATGTACAAGCAATTGACATAACCTGTGGACCAGGTCATGGTATCAGCATCGGAAGCCTAGGGAAGGAAAAGTCCAAGGATTTTGTTTCAACTGTATCAGTAAATGGAGCTAAGTTTTCTGGAACTTCAAATGGAGTTAGGATTAAGACATGGCAGGGAGGGTCAGGAAGTGCAAGCAACATCAAGTTTCAGAACATTCAAATGGACAACGTGACCAACCCCATAATAATAGACCAGAACTACTGTGACCAGAAGAAGCCATGCAAACAAGAGAGCTCCGCAGTTCAGATTAGGAATGTGATATACCAGAACATAAAAGGAACAAGTTCTTCTGATGTTGCTGTGAAGTTTGATTGCAGCCAGAACTATCCTTGTCAGGGAATAGTTTTGCAGAACATAGACTTGCAACATGAAGGAGGAGAAGCTGCAGAAGCTAATTGTAAGAATGTTAAGTTATCCAACATTGGAGATGTTTCCCCTAGCTGCTCTTAA | 1293 | 0.4107 | MALQRHLLPFFFIVISFVSCYCTGLLQENPLSLNVDDGGTFKDLIKQRTDVLSLKSFDRLGSKASSLTTVNVNDYGAKGDGKTDDTEAFEKVWEVACSSKESVKLVVPEQSYLLMPIRFSGPCKSTIGIQISGTLEASADPSDYNKEHNHWIVFDSVESLSVQGGGTINGNGNIWWENSCKRNKNNAVTFYKCEDLLVQDLTIKNSQQIHVSFQDSTNVKVSGLTVTAPGDSPNTDGIHVTNTQNIQISSSVIGTGDDCISIVSGSTNVQAIDITCGPGHGISIGSLGKEKSKDFVSTVSVNGAKFSGTSNGVRIKTWQGGSGSASNIKFQNIQMDNVTNPIIIDQNYCDQKKPCKQESSAVQIRNVIYQNIKGTSSSDVAVKFDCSQNYPCQGIVLQNIDLQHEGGEAAEANCKNVKLSNIGDVSPSCS | 430 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bach8g01143 | 430 | FunFam | Polygalacturonase QRT2 | 56 | 430 | - | - | |
| Bach8g01143 | 430 | SMART | pbh1 | 325 | 346 | IPR006626 | - | |
| Bach8g01143 | 430 | SMART | pbh1 | 243 | 264 | IPR006626 | - | |
| Bach8g01143 | 430 | SMART | pbh1 | 216 | 242 | IPR006626 | - | |
| Bach8g01143 | 430 | SMART | pbh1 | 359 | 399 | IPR006626 | - | |
| Bach8g01143 | 430 | SMART | pbh1 | 296 | 317 | IPR006626 | - | |
| Bach8g01143 | 430 | SMART | pbh1 | 193 | 213 | IPR006626 | - | |
| Bach8g01143 | 430 | ProSitePatterns | Polygalacturonase active site. | 273 | 286 | IPR000743 | GO:0004650|GO:0005975 | |
| Bach8g01143 | 430 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 20 | - | - | |
| Bach8g01143 | 430 | PANTHER | - | 68 | 417 | - | - | |
| Bach8g01143 | 430 | SUPERFAMILY | Pectin lyase-like | 68 | 429 | IPR011050 | - | |
| Bach8g01143 | 430 | Pfam | Glycosyl hydrolases family 28 | 97 | 418 | IPR000743 | GO:0004650|GO:0005975 | |
| Bach8g01143 | 430 | Gene3D | - | 60 | 427 | IPR012334 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bach8g01143 | Bach-Chr8 | 7641087 | 7643529 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bach8g01143 | 5 | 430 | Glycoside Hydrolase | AT3G57510 | 53.604 | 2.24e-155 | 444 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bach8g01143 | K01184 | - | gmx:100816917 | 611.298 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Bach1g02177 | 1 | 33945401 | 33947771 | Bach8g01143 | 8 | 7641087 | 7643529 | BWGD | |
| Bach8g01143 | 8 | 7641087 | 7643529 | Bach8g01143 | 8 | 7641087 | 7643529 | ECH |