Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g00922 ATGGACATATTAGAGTATTCAAGGATTGTTTTAGACAAAATTCAGAAGTTTGAGCCAGAACATGCTGCAAAGATAGTTGGCTATCTGCTTGTCCATGGGCATGACATGGTTAACTTGGCCTCATGCGAGGACCATTTGATTCGTGAAGTGGCCTTTAAAGCCAAAGCCGAGCTTCAAAGATTCGCCCCTAAGCCTTCCATAAATCCAATCTCTATTCCTGTGAGCCCTCAACAAGGTTTTAGCCATTTATCTGCCAGAACTCCAACTTCACTGGCGAGCTTGCAGGTTCCCTCTCCCATTTGGGACTCACCTTCTCCAAGCAATACAAGTTCAGATTTCATAGGTTACATGGATTTTATCCCAGAATTTCGGAAGCAGCCCCAAATACTTGGCTTAGAGAATCATCTAGATCATGTAAATGTAGGAACTGCAGCAATTGGCAATGATCACTACGGTATAGATTCTGCGACAGGCAATTTGAATGGGAAAACAAGTAGAAGGTTTTCAAGTCCGTATGAATTTCCAGCCAAGACCTGTCACTATTTTATTAAAGGGTTCTGTAAGCATGGAAGTAGCTGTAGGTACCATCATGGACAAGTTATCCCCGAGAGCTCATCACAGATGTATGGAAAAGATGCTTGGAATGACGAGCAAATGATTTTACCAGGATCACTAGCACAGTTAGAGACAGAAATCATTGAGCTCCTGAAACCAAGAAGAGGCAATCCTATCTCAATTGCTTCCCTGCCAATGGCGTACTATGATAGGTACAAAAAGGTACTTCAGGCTGATGGTTACCTCACTGAGAGCCAGAGGCATGGTAAATCTGGATACAGTTTGACAAAGCTTCTTGCGCGTTTGAAGAATAGAATTAGGCTGATAGACAGACCTCATGGTCAACATGCGGTGGTTCTTGCTGAAGATGCTCCAAAATATATGGAGAAAGGTGATCCTGGTCAAAGTATTAGTGCATCACGCCAGATATACTTAACATTTCCAGCTGAGAGCACTTTCACAGAAGAGGATGTCTCAAATTACTTCAACAACTTTGGGTGTGTTGAAGATGTCAGGATTCCCTGCCAACAGAAACGGATGTTTGGGTTTGTAACATTTGCTGATCCATTAACTGTTAAGACCATTTTGGAAAAGGGAAATCCCCATTTTGTTCGTGGGTCTCGTGTGCTCGTGAAACCTTACCGGGAAAGGTCGAAGCTCATGGATAGGAAGTACTCAGACAGAATTGAGCCTCATCCAGGCTGCTATTCTCCTCATTATGTTGACATGGACTCTGAACTTCCCTCAATCCCAAGACCGTGTGGGAACCCTAGATTTCTGAGGAGGCAATTCATGGAAGAACAAGAGCAGGCTCTTGAATTTCAGAGGACACGTCTCGCAGAGCTGCAGATGGCTGAGAAGTCTCTGGGTAGTTCACGCCACTTTGGCTTCTCCATGGATGGATCAAAAGTTTCAGAAGATTGTTTCAATTTCCAGACCTCAGATTGTTTCAGTTACGGTCCAAGTGACAAATCCAGGTATATAGGTACCAGCTACACTGATGAGGAGAGCCAAGGACTAAGTCTCCCGGATAGCCCATTTGCGATTCCAGTAGATAGTGGAATTTCAGCAGTCTTTTAG 1635 0.4385 MDILEYSRIVLDKIQKFEPEHAAKIVGYLLVHGHDMVNLASCEDHLIREVAFKAKAELQRFAPKPSINPISIPVSPQQGFSHLSARTPTSLASLQVPSPIWDSPSPSNTSSDFIGYMDFIPEFRKQPQILGLENHLDHVNVGTAAIGNDHYGIDSATGNLNGKTSRRFSSPYEFPAKTCHYFIKGFCKHGSSCRYHHGQVIPESSSQMYGKDAWNDEQMILPGSLAQLETEIIELLKPRRGNPISIASLPMAYYDRYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNRIRLIDRPHGQHAVVLAEDAPKYMEKGDPGQSISASRQIYLTFPAESTFTEEDVSNYFNNFGCVEDVRIPCQQKRMFGFVTFADPLTVKTILEKGNPHFVRGSRVLVKPYRERSKLMDRKYSDRIEPHPGCYSPHYVDMDSELPSIPRPCGNPRFLRRQFMEEQEQALEFQRTRLAELQMAEKSLGSSRHFGFSMDGSKVSEDCFNFQTSDCFSYGPSDKSRYIGTSYTDEESQGLSLPDSPFAIPVDSGISAVF 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g00922 544 ProSiteProfiles OST-type HTH domain profile. 224 308 IPR025605 -
Bach3g00922 544 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 333 404 - -
Bach3g00922 544 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 337 393 IPR000504 GO:0003723
Bach3g00922 544 SUPERFAMILY CCCH zinc finger 175 198 IPR036855 GO:0046872
Bach3g00922 544 Pfam OST-HTH/LOTUS domain 224 302 IPR025605 -
Bach3g00922 544 SMART rrm1_1 327 397 IPR000504 GO:0003723
Bach3g00922 544 Coils Coil 450 470 - -
Bach3g00922 544 Gene3D - 134 210 - -
Bach3g00922 544 CDD RRM_AtC3H46_like 328 397 IPR034365 -
Bach3g00922 544 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 536 - -
Bach3g00922 544 ProSiteProfiles Zinc finger C3H1-type profile. 173 200 IPR000571 GO:0046872
Bach3g00922 544 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 326 401 IPR000504 GO:0003723
Bach3g00922 544 SUPERFAMILY RNA-binding domain, RBD 337 429 IPR035979 GO:0003676
Bach3g00922 544 Gene3D - 329 405 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g00922 Bach-Chr3 19839249 19841985 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g00922 - - gmx:100806206 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach12g01789 12 14199699 14203028 Bach3g00922 3 19839249 19841985 BWGD
Bach3g00922 3 19839249 19841985 Bach3g00922 3 19839249 19841985 ECH