Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach12g00608 GCTCTCTGTGCTTCTTCGGTTTTCTTTTCTGACAAAGCCCTTACATAAATGGCGGCAACACCATCGTTGGACGAAGAAACCGCGAAGAAAGTGATACGACAGGTTGAGTTCTACTTCGGTGATAGCAACCTTCCTAGGGACAATTTTCTGAAGAATTCTATCGCGGAAAGCGATGATGGCATGGTTAGTTTGGCTTTGATTTGTTCGTTTACTCGGATGAGAAGTCATCTTAATCTAGGGAATGTAAAGACAGATGAGGTGGCTGAAGATACTGTCAAAGCTGTTGCTGAAACTTTGAGAAAATCGGATTTACTCAAGATCTCAGAAGATGGGAAAAAAATTGGCAGGACTACTGAACTATCAAAACTGGACGAGGTAATTGAGCAGGTAGATGTGAGAACAATTGCCGCTTCACCATTTGAATATGATGTGAAGCGTGAAGACCTGGAGACATTCTTTGGCCAATATGCCAAGGTTAATAGTGTGAGGATGCCCCGTCATGTTGGAGACAAAAGATTCTTCTGTGGCACTGCCCTGGTTGAGTTTTCATCGGAGGAAGATGCTGAGAAGGTTATGAAGCAAACATTAGAGTATGCAGGTGTTGAGTTAGAATTAAAACCGAGGAAGGATTTTGATGCTAAGAGAGCCAGTGAGTTAGAAGATCATGAAAAATTTTGTTCAGTCACGAGTTCAAAACAACGTGATAACTCAAATGGGGAAGCAAGCTATCCTAAGGGCTTAATTATTGCCTTCAAACTCAAGAGCATGTCTGATGGAGTTCAAGCGGAAAAAGATGGTACCTGTCAACATGCCAATGACGATAATATTGTCTCCAAAACAGATGAACAAAAGCCCTTAAAAGATGCTGCTGAAAAAAGTGATCCAAAGGTTTCAGAAAATATTGACAACAATAAAGAAAACCATGGGGAGAATGAAAGAAAAGAAACTGAAGTTGAAGAAAAGACTCAGGAAACAGATGAAAAATTTTCAGCGGCTTCTTACAAGGATAACATGGATGTTGTCATGCGTGAGGATTTAAAGGGTGTCTTTGGAAAGTTTGGTACTGTGAAGTACATCGATTTCAAGATTGGAGCTGATTCAGGATATATCCGGTTTGAAGAACCTGATGCTGGTCAGAAAGCTCGTGCTGCTGCAGTTCTCACTGAAAAGGGTGGTTTGGTCGTTAAAAATTATACTGCTGCTCTAGATCCGGTGACTGGCGAGGCTGAAAGGGAATACTGGAGTGCTATCCGTGGCAATCAAGAAAAGCACAGAGAAAACAAGAGTGGCCGTGGAAGGGGAGGAAAGTTTAGCAGAGGAGGAAAACATGCCCATTCTAGGGAGAATAACTCAGCAACAGATCGCCCAAATAAAGCTCAGAAAATTGGAGCAGCATAAAGGTTGTATCTTTGTTTAGA 1418 0.4175 MAATPSLDEETAKKVIRQVEFYFGDSNLPRDNFLKNSIAESDDGMVSLALICSFTRMRSHLNLGNVKTDEVAEDTVKAVAETLRKSDLLKISEDGKKIGRTTELSKLDEVIEQVDVRTIAASPFEYDVKREDLETFFGQYAKVNSVRMPRHVGDKRFFCGTALVEFSSEEDAEKVMKQTLEYAGVELELKPRKDFDAKRASELEDHEKFCSVTSSKQRDNSNGEASYPKGLIIAFKLKSMSDGVQAEKDGTCQHANDDNIVSKTDEQKPLKDAAEKSDPKVSENIDNNKENHGENERKETEVEEKTQETDEKFSAASYKDNMDVVMREDLKGVFGKFGTVKYIDFKIGADSGYIRFEEPDAGQKARAAAVLTEKGGLVVKNYTAALDPVTGEAEREYWSAIRGNQEKHRENKSGRGRGGKFSRGGKHAHSRENNSATDRPNKAQKIGAA 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach12g00608 449 MobiDBLite consensus disorder prediction 251 312 - -
Bach12g00608 449 MobiDBLite consensus disorder prediction 248 312 - -
Bach12g00608 449 SUPERFAMILY RNA-binding domain, RBD 327 410 IPR035979 GO:0003676
Bach12g00608 449 ProSiteProfiles La-type HTH domain profile. 5 109 IPR006630 -
Bach12g00608 449 MobiDBLite consensus disorder prediction 206 225 - -
Bach12g00608 449 Gene3D - 110 209 IPR012677 -
Bach12g00608 449 CDD RRM1_La 118 190 - -
Bach12g00608 449 SUPERFAMILY "Winged helix" DNA-binding domain 8 103 IPR036390 -
Bach12g00608 449 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 202 IPR000504 GO:0003723
Bach12g00608 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 178 IPR000504 GO:0003723
Bach12g00608 449 SUPERFAMILY RNA-binding domain, RBD 110 194 IPR035979 GO:0003676
Bach12g00608 449 CDD LA_like_plant 11 100 - -
Bach12g00608 449 Pfam RNA binding motif 325 417 IPR014886 GO:0003723
Bach12g00608 449 Gene3D - 7 108 IPR036388 -
Bach12g00608 449 ProSiteProfiles xRRM domain profile. 304 428 IPR014886 GO:0003723
Bach12g00608 449 PRINTS Lupus La protein signature 18 35 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bach12g00608 449 PRINTS Lupus La protein signature 158 176 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bach12g00608 449 PRINTS Lupus La protein signature 44 59 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bach12g00608 449 MobiDBLite consensus disorder prediction 401 449 - -
Bach12g00608 449 MobiDBLite consensus disorder prediction 401 417 - -
Bach12g00608 449 FunFam La protein 2 7 107 - -
Bach12g00608 449 Gene3D - 292 417 IPR012677 -
Bach12g00608 449 Pfam La domain 15 85 IPR006630 -
Bach12g00608 449 SMART rrm1_1 118 190 IPR000504 GO:0003723
Bach12g00608 449 PANTHER LUPUS LA PROTEIN-RELATED 11 314 IPR045180 -
Bach12g00608 449 SMART la 9 101 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach12g00608 Bach-Chr12 4135095 4139084 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach12g00608 K11090 - qsa:O6P43_019295 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach3g01825 3 26546914 26550801 Bach12g00608 12 4135095 4139084 BWGD
Bach12g00608 12 4135095 4139084 Bach12g00608 12 4135095 4139084 ECH