Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach10g00542 GACTCTTTTTTTTCAGCTTCCAAGTGCGACTCCCTGAAAACAAACGCGAGATATTAAGGTAAGGGACCTCCGCTCTGATTAGACAAAGGTGATAGGCAGAAGAGAGAACGAGGGGAAAAGAGCTGCGACGCATATAGAGTATAGACGACCAAAGCAAGCTCAGGAGCGGAGCTGAAATTGTGCCGTAGAGATGTGGCGGTGCGTCGCTCGTGGACTTCGAGTACCAGCTTCCAAGGGATCCACTCCAAATGACCGACCTAGATCTCACATTTCCAGATTTTTCTCGACTGGGGGAAGCTCTGAGGTGGCTGGGGGTAAATATACTGTGGTGGATCATACTTATGATGCAGTTGTTGTAGGCGCTGGTGGGGCAGGGTTGAGAGCTGCTATTGGACTTTCAGAACATGGATTTAATACTGCTTGCATTACTAAGCTTTTCCCTACTCGTTCGCACACTGTTGCAGCTCAGGGTGGTATAAATGCTGCATTGGGAAATATGACTGAAGATGATTGGAGGTGGCACATGTACGACACGGTCAAGGGAAGTGATTGGCTAGGAGATCAGGATGCCATCCAATATATGTGTAGGGAGGCACCAAAAGCGGTTATTGAGCTTGAGAATTATGGATTGCCATTTTCTCGTACTGAGGATGGAAAAATATACCAGCGTGCATTTGGTGGTCAAAGCCTGAACTTTGGAAAAGGTGGTCAGGCATATCGATGTGCTTGTGCTGCTGATCGAACTGGACATGCATTATTGCACTCTCTCTATGGCCAGGCTATGAGACATAATACACAATTTTTCGTGGAATATTTTGCTTTGGACCTTTTGATGAATAGTGATGGTAGTTGTCAAGGAGTAATTGCATTGAATATGGAGGATGGAACACTGCATCGGTTCCAAGCTGCTTCTACAATTTTGGCCACAGGGGGTTATGGTAGGGCATATTTTTCTGCAACCTCAGCCCATACATGCACCGGAGATGGCAATGCTATGGTTGCACGTGCTGGACTCCCACTCCAGGATTTGGAGTTTGTGCAATTTCATCCTACAGGTATATATGGAGCTGGTTGCCTTATTACAGAAGGTTCTCGTGGAGAAGGTGGAATTCTTAGGAACAGTGAGGGTGAGCGATTCATGGAACGCTATGCCCCTACTGCAAAGGACCTTGCGTCTAGAGATGTGGTTTCAAGATCAATGACTATGGAGATTCGGGAAGGCCGTGGTGTAGGACCTCTGAAGGACCACATCTATCTCCACTTGAATCACTTACCCCCGGATGTGCTCAAGGAGAGGCTTCCTGGTATCTCTGAAACTGCTGCTATTTTTGCTGGTGTTGATGTTACAAAGGAACCAATCCCTGTTTTGCCAACAGTGCACTATAACATGGGTGGCATTCCCACAAACTACCATGGAGAGGTTGTTACAAGTCAGGGTGACAATCCAGATTCAGTAGTACCTGGATTGATGGCTGCTGGTGAAGCAGCCTGTGCATCCGTTCATGGTGCCAATAGGCTTGGTGCAAATTCACTTCTGGACATTGTTGTTTTTGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATCCATAAGCCAGGTGAGAAACAAAAGCCCTTGGAGAATGATGCTGGTCAGAAGACAATTGCATGGCTGGACAAATTAAGAAATTCAAATGGTTCTTTACCAACTTCACAAATTCGGTTGAATATGCAACGAATAATGCAAACCAATGCTGCTGTGTTCCGTACACAAGAAACGTTAGAAGAAGGTTGTCAACTAATTGATAAAGCATGGGAGAGCTTTCATGATGTCAAGTTGAAGGACCGGAGTCTGATATGGAACTCTGACCTGATTGAGACTTTTGAGTTGGAAAATCTTTTGATAAATGCCTGCATCACTATGCACTCTGCTGAAACCAGGAAAGAGAGTAGAGGAGCTCATGCCCGTGAGGACTTCACGAAAAGAGATGATGAGAAATGGCTTAAACACACTTTGGGATATTGGGAGAAAGAAAAGGTCCGGCTAGATTACAGACCAGTGCACATGAATACATTGGACGACGAGGTTGAATCATTCCCCCCTAAAGCTCGTGTGTATTAAGAGAACTAAATTACTATGGATGGCTTATGCCAATTGTTTCAGTTAGTGTCGAATGACTGATCCGAGTAAATTGATGCAATAAAATTGTTGTCGTCGCATCATTTTGACTAAGGATGCAATAAATTATTGTAAGCGCATCATTTTGACGATAGTTGTTAC 2257 0.4484 MWRCVARGLRVPASKGSTPNDRPRSHISRFFSTGGSSEVAGGKYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHSLYGQAMRHNTQFFVEYFALDLLMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTSQGDNPDSVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIHKPGEKQKPLENDAGQKTIAWLDKLRNSNGSLPTSQIRLNMQRIMQTNAAVFRTQETLEEGCQLIDKAWESFHDVKLKDRSLIWNSDLIETFELENLLINACITMHSAETRKESRGAHAREDFTKRDDEKWLKHTLGYWEKEKVRLDYRPVHMNTLDDEVESFPPKARVY 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach10g00542 635 Pfam Fumarate reductase flavoprotein C-term 504 635 IPR015939 GO:0016491
Bach10g00542 635 NCBIfam succinate dehydrogenase flavoprotein subunit 49 635 IPR011281 GO:0006099|GO:0016627|GO:0050660
Bach10g00542 635 Gene3D - 475 585 - -
Bach10g00542 635 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 40 265 - -
Bach10g00542 635 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 290 393 IPR027477 -
Bach10g00542 635 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 41 635 IPR030664 -
Bach10g00542 635 Pfam FAD binding domain 52 448 IPR003953 -
Bach10g00542 635 PIRSF SDHA_APRA_LASPO 42 625 - -
Bach10g00542 635 Gene3D succinate dehydrogenase protein domain 586 635 - -
Bach10g00542 635 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 474 590 - -
Bach10g00542 635 SUPERFAMILY FAD/NAD(P)-binding domain 44 474 IPR036188 -
Bach10g00542 635 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 280 398 IPR027477 -
Bach10g00542 635 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 494 635 IPR037099 GO:0016491
Bach10g00542 635 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 394 459 - -
Bach10g00542 635 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 290 393 - -
Bach10g00542 635 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 86 95 IPR003952 GO:0016491
Bach10g00542 635 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 587 635 - -
Bach10g00542 635 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 52 635 IPR014006 GO:0016627|GO:0022900|GO:0050660
Bach10g00542 635 Gene3D - 52 459 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach10g00542 Bach-Chr10 3865448 3871022 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach10g00542 K00234 - gmx:100802169 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach4g00631 4 4214250 4219965 Bach10g00542 10 3865448 3871022 BWGD
Bach10g00542 10 3865448 3871022 Bach10g00542 10 3865448 3871022 ECH