Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g02893 ATGTCTTCACAAAGTGTAGTTCTTTCATCACTTTTGCTCATGTCATTGGTTTCTTCTTCTGGCTTGTGTTTTGGCTCTTACATTGGCCCTAGGAGGTTGATGCAGACAAAACATGATGAAAATATGGATATCATGTTAAGGGTTCATCATCAATCAACGCCATCTTCAATGTCTCAAAAAACGTTTAGTGTTTCACATTATGGAGCAAAATCTGGTGATGGAAGAGTTGATAATGAGGCATTTGAGAAGGCATGGAATTTAGCATGTTCAGAAGGGGGTGCTCTTGTGGTCCCTGAAAAGAAGGTTTATCACCTTAAGCCAATAAAATTTTCAGGCCCATGCCAAGCCACTACCACTTTTATGTTATATGGAACAATCAAAGCATGGCCTAAAATTTCAGCCTATGAAGAAGATAGACAGCACTGGATTATGTTTGATAATATAACGAATTTTGGTGTTGATGGTGGCGGCACTTTCAACGGCAATGGAAAAATATGGTGGGAAAACTCTTGCAAAACTAACGAAAGCCTTCCATGTAAGGATGCACCAACTGCTGTGACTTTCAATGAATGCAACAATTTGAGAGTGGAAAACGTTAAATTCCGAAATGCACAACAAATGCATGTTAGATTTCAGAAATGCAACAACGTTACAGCTTCAAATCTGGTGGTTCAAGCTCCTGGGGATAGCCCTAACACTGATGGACTTCACGTCACTCAAACCAAAAATATTTTCATAAGAAACTCTGTCATTCGTACAGGTGATGACTGCATTTCAATAGTGAGTGGTTCCCAAAATGTTCGTGCTAGGGATATAGTTTGTGGACCAGGCCATGGAATCAGCATTGGAAGCTTAGGAGCTGGTAATTCAGAAGCACAAGTCTCGAATGTGGTAATCGACGGAGCCATTTTCACAGGAACCTCTAATGGTGTTAGAATTAAGACTTGGCAGGGAGGTTCTGGATATGCAAAAGACATCAAATTTATTAATATAGAAATGCGAAACGTGACCAATCCCATAATCATAGATCAAAACTACTGCGATCAGAAAGAACCATGCCAAGAGCAGGAATCAGCAGTGAAATTGAGCAATGTGGTGTACCAGAACATCATAGGAACAAGTGCAACACAAGTTGCAATCAAATTCAACTGCAGCAAAACCGTCCCCTGCAGATCAATCTATTTGCAAGACGTGATTCTAAAACCGGAACGCCATGGCAGCGACACGGTTGCGACATGCGAGAACGTTAGATATGCCAACAGAGGACAGCTTTTTCCTCAGTGCTCTACTGCTTGA 1296 0.4105 MSSQSVVLSSLLLMSLVSSSGLCFGSYIGPRRLMQTKHDENMDIMLRVHHQSTPSSMSQKTFSVSHYGAKSGDGRVDNEAFEKAWNLACSEGGALVVPEKKVYHLKPIKFSGPCQATTTFMLYGTIKAWPKISAYEEDRQHWIMFDNITNFGVDGGGTFNGNGKIWWENSCKTNESLPCKDAPTAVTFNECNNLRVENVKFRNAQQMHVRFQKCNNVTASNLVVQAPGDSPNTDGLHVTQTKNIFIRNSVIRTGDDCISIVSGSQNVRARDIVCGPGHGISIGSLGAGNSEAQVSNVVIDGAIFTGTSNGVRIKTWQGGSGYAKDIKFINIEMRNVTNPIIIDQNYCDQKEPCQEQESAVKLSNVVYQNIIGTSATQVAIKFNCSKTVPCRSIYLQDVILKPERHGSDTVATCENVRYANRGQLFPQCSTA 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g02893 431 SUPERFAMILY Pectin lyase-like 51 429 IPR011050 -
Arst8g02893 431 FunFam Polygalacturonase QRT2 47 429 - -
Arst8g02893 431 Pfam Glycosyl hydrolases family 28 95 417 IPR000743 GO:0004650|GO:0005975
Arst8g02893 431 PANTHER - 58 416 - -
Arst8g02893 431 ProSitePatterns Polygalacturonase active site. 271 284 IPR000743 GO:0004650|GO:0005975
Arst8g02893 431 Gene3D - 47 428 IPR012334 -
Arst8g02893 431 SMART pbh1 294 315 IPR006626 -
Arst8g02893 431 SMART pbh1 191 211 IPR006626 -
Arst8g02893 431 SMART pbh1 241 262 IPR006626 -
Arst8g02893 431 SMART pbh1 214 240 IPR006626 -
Arst8g02893 431 SMART pbh1 323 344 IPR006626 -
Arst8g02893 431 SMART pbh1 264 284 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g02893 Arst-Chr8 39651921 39656394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g02893 1 429 Glycoside Hydrolase AT3G07970 52.691 3.27e-157 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g02893 K01184 - gmx:100796446 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g02893 8 39651921 39656394 Arst8g02893 8 39651921 39656394 ECH
Arst3g01172 3 9046410 9049595 Arst8g02893 8 39651921 39656394 PCT