Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g01172 ATGTCTTTATTACTACGGCTATTTATCTCACTTTACATTACCCTTGCTTCATTAGGCTTATGTTTTAGCTATTATATAGAGGAATCATTTCATCACACAAATGTTGAACCATACATTGTTCATCATGATGGGAGATTTATCAAGAGAAAACATGAACACTTTGGCCTAATGATGAGAGCTAATAGAGCTAAAAGCCCTCATTTTTCAAGGCCAAGTGGAACAATTAGTGTTAATGACTTCGGAGCCAGAGCTGATGGAAGTGACGACAGTCGGGCATTTGAAAAGGCTTGGAATGAAGCATGTTCTAGTGGGGTCACCCTTGTGGTGCCTGAAAGAAGGACCTACACTCTTAAGCCAATAAGATTTTCAGGTCCATGCAGACCCAACACTGCATTCATGATATATGGAACAATTAAGGCATGGCCAGAGATGTCAGCATATGAAGATGATAGAAAACATTGGATTGTGTTTGATAGTGTCAACAACTTCAGAGTTGATGGTGGTGGCACTTTCAATGGCAATGGCAAAAAATGGTGGCAGAATTCATGCAAAACTAATGATAACCTTCCATGCAAAGATGCACCAACTGCTGTGACATTTTACCAATGCAAGAATTTGAGAGTGGCAAATGTGAGATTGAAAGATGCACAACAAATGCATGTGGCATTTGAGAGTTGCTTCAATGTTATAGTTTCCAATGTTCTTGTTAGAGCACCAGGATACAGTCCCAACACTGATGGAATTCATGTTGCTGAAACACAAAACATTGTTATAAGCGACAGTGACATTGGAACAGGTGATGATTGTATTTCAATAGTAAGTGGATCTCAAAATGTTAGAGCTACAGATATCACATGTGGACCAGGACATGGAATCAGCATTGGAAGCTTAGGAGCTGATAACTCTGAAGCTGTAGTGTCCAATGTGGTTGTGAACAGAGCCACCTTAACAGGAACAAGTAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCTGGTTATGCAAGGAACATAAAGTTTTTGAACATAGTGATGCAAAATGTGACAAATCCCATAATCATAGATCAAAACTACTGTGATCAAGAAAAGCCATGCCATCAGCAGAACTCAGGAGTTCAACTAAGCAATGTGCTTTACCAAAACATCAGAGGAACAAGTGCTTCAGAAGTGGCTATAAAATTTGATTGTAGCAGAACAGTGCCATGCAGAGAAATCTACCTTCAGGATGTGATATTAGAAGCAGAAGATGGTGGCAATGGCGACACGGTTGCCACGTGTCAGAATGTAAGATATGTGAACCGAGGAAAGTTTTTCCCTCAATGCACTCCAATGAGAAATCAAAGGGGAGGAAGATTTTAA 1359 0.3996 MSLLLRLFISLYITLASLGLCFSYYIEESFHHTNVEPYIVHHDGRFIKRKHEHFGLMMRANRAKSPHFSRPSGTISVNDFGARADGSDDSRAFEKAWNEACSSGVTLVVPERRTYTLKPIRFSGPCRPNTAFMIYGTIKAWPEMSAYEDDRKHWIVFDSVNNFRVDGGGTFNGNGKKWWQNSCKTNDNLPCKDAPTAVTFYQCKNLRVANVRLKDAQQMHVAFESCFNVIVSNVLVRAPGYSPNTDGIHVAETQNIVISDSDIGTGDDCISIVSGSQNVRATDITCGPGHGISIGSLGADNSEAVVSNVVVNRATLTGTSNGVRIKTWQGGSGYARNIKFLNIVMQNVTNPIIIDQNYCDQEKPCHQQNSGVQLSNVLYQNIRGTSASEVAIKFDCSRTVPCREIYLQDVILEAEDGGNGDTVATCQNVRYVNRGKFFPQCTPMRNQRGGRF 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g01172 452 SUPERFAMILY Pectin lyase-like 70 443 IPR011050 -
Arst3g01172 452 Pfam Glycosyl hydrolases family 28 105 430 IPR000743 GO:0004650|GO:0005975
Arst3g01172 452 PANTHER - 74 429 - -
Arst3g01172 452 SMART pbh1 335 356 IPR006626 -
Arst3g01172 452 SMART pbh1 253 274 IPR006626 -
Arst3g01172 452 SMART pbh1 306 327 IPR006626 -
Arst3g01172 452 SMART pbh1 226 252 IPR006626 -
Arst3g01172 452 FunFam Polygalacturonase QRT2 60 442 - -
Arst3g01172 452 Gene3D - 61 446 IPR012334 -
Arst3g01172 452 ProSitePatterns Polygalacturonase active site. 283 296 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g01172 Arst-Chr3 9046410 9049595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g01172 7 442 Glycoside Hydrolase AT3G07970 54.525 2.44e-162 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g01172 K01184 - gmx:732596 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g01172 3 9046410 9049595 Arst3g01172 3 9046410 9049595 ECH
Arst3g01172 3 9046410 9049595 Arst8g02893 8 39651921 39656394 PCT