Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst8g01472 ATGTTTTCAGGGGTAGCCGGAATGCTCAACCGTGGCCACAAGATCAAAGGGACTGTGGTCTTGATGCGCAAGAATGTCCTGGACGTTGACACCTTTACTGATGTTGTTGCCACCGCCAACATCGGAGGCCTCATTGGCACCGGCATCAACGTCATTGGCTCCACCGTTGACGCCCTCACCGCCTTCTTAGGCCGCAGTGTCTCCCTCCAGCTCATCAGTTCTACTCAATCCGATGAGAATGGCAACGGAAAAGTTGTAAAGGATACATTTCTGGAAGGTATTATTGCGTCGTTACCAACCTTAGGAGCTGGAGAATCTGCATTCAGCATTCATTTTGAATGGGACGATAGCATGGGAATCCCTGGTGCATTTTACATCAAGAACTATATGCAAGTTGAGTTTTTCCTCAAGACCTTAACTCTTGAAGATGTTCCAAACCAAGGAACCATCCATTTTGTTTGCAACTCTTGGGTTTACAACTCTAAACTCTACAAATCCCCACGCATTTTCTTCTCCAACAAGCCATATCTTCCAAGTGAAACACCAGCTCCACTTGTTAAGTACAGAGAAGAAGACCTGAAAAATTTAAGAGGTGATGGAAAAGGAGAGCGTCAGGAGCATGAAAGAATTTATGATTATGATGTCTACAATGATTTGGGGAATCCGGATCGGAACGAAAACCATGCTTGCCCCATTCTTGGAGGTTCTACCACTTTCCCTTACCCTCGCAGGGGAAGAACTGGTAGATATCCTGCAAGAAATGATCCTAACAGCGAGAAACCAGGGGATGTTTATGTTCCTAGAGATGAAAACTTTGGACACTTGAAATCTTCGGACTTTCTTGCAAATTCAATAAAAGTTTTGACTCGGTATGTGCTGCCAGCTTTTGAATCTGTGTTCGATTTGAATTTGACCCCAAATGAGTTTGATAGCTTCCAAGATGTTCGTGATCTCTATGAAGGCGGAATTAGGCTACCTACGGAAGTAATTAGCACAATTAGCCCCTTACCTGTCATCAAAGAACTCTTCCGTACCGATGGCGAACAAGTCCTCAAGTTTCCACCACCTCACATCATTCAAGTGAATAAATCTGCATGGATGACTGATGAAGAATTCGCAAGAGAAATGATTGCTGGTGTAAATCCTTGCATGATTCGTAGTCTTCAAGAGTTTCCTCCCAAAAGCACTTTGGATCCCACAATCTATGGTGATCAAAACAGTAAGATAACTGCAGAAGTTCTTGATCTTGAAGGGTGCTCACTAGAAGAGGCAATTAATGGTCGGAGACTGTTTATATTAGATTACCATGATGTGTTCATGCCATATGTGAGGCGAATAAATGAGACCCATGCAAAAGCATATGCCACTAGGACTATCCTTTTTCTGAAAGAGGATGGAACATTGAAGCCAGTGGCCATTGAATTAAGCTTGCCACATCCTGATGGAGATAAATCAGGTGCTATCAGTGAAGTTATCTTACCTGCAAAGGAAGGTGTTGAAAGCACAATTTGGCTACTAGCCAAAGCTTATGTCATAGTAAATGACTCATGCTACCATCAACTCATGAGCCATTGGTTGAATACTCATGCAGTTATTGAGCCATTTGTGATAGCAACAAATAGACAGCTAAGTGTGATTCACCCAATTTATAAACTTTTATCTCCACACTACCGTGACACTATGAACATCAATGCACTTGCAAGGCAGAATCTGATTAATTCTGATGGCATAATAGAAAGAACTTTCTTGCCCTCCAAGTTTTCTCTGGAGATGTCTTCAGCTGTTTATAAGAACTGGGTTTTCACTGATCAAGCACTACCTGCTGATCTCATCAAGAGAGGAATGGCAGTGGAGGATTCATCTTCTCCTTATGGAATTCGTCTTGTAATAGAAGACTACCCTTATGCTGTTGATGGACTAGAGATATGGTTTGCCATTAAGACATGGGTCCAAGATTATGTCTCATTGTACTATCCAACAGACAATGATCTCAGAAAAGACCCTGAACTCCAAAATTGGTGGAAAGAAGCTGTTGAGGTAGGTCATGGTGATTTGAAAGATAAGCCATGGTGGCCAAAGATGCAGACAGTTGAAGAGTTAGTTGAATCATGCACAACCATAATATGGACCGCGTCGGCGCTCCATGCAGCCGTTAATTTTGGACAGTATCCATATGGAGGGCTTATACTGAACCGTCCAACACTTAGCAGAAGATTGCTTCCTGAACAAGGCACTGCAGAGTATGAAGAGATGGTGAAGAGTCACCAAAAGGCTTATCTGAGAACAATTACACCGAAATTGGAGACTCTTATTGACCTTACAACCATAGAAATCTTATCAAAGCATGCTTCTGATGAGGTGTATCTTGGAGAGAGGGATAATCCACATTGGACATTTGATTCAAGAGCATTACAAGCATTTCAGAGATTTGGGAACAAACTGAGTGAGATTGAGGAGAAGCTAACAGAGAAGAACAAAGATGGGAGACTGAGTAATAGAATTGGGCCAGTTGAATTGCCATACACTCTGCTTCATCCTACTAGCAATGAAGGGTTGACTTTTAGAGGAGTTCCAAACAGCATCTCTATCTAA 2592 0.4236 MFSGVAGMLNRGHKIKGTVVLMRKNVLDVDTFTDVVATANIGGLIGTGINVIGSTVDALTAFLGRSVSLQLISSTQSDENGNGKVVKDTFLEGIIASLPTLGAGESAFSIHFEWDDSMGIPGAFYIKNYMQVEFFLKTLTLEDVPNQGTIHFVCNSWVYNSKLYKSPRIFFSNKPYLPSETPAPLVKYREEDLKNLRGDGKGERQEHERIYDYDVYNDLGNPDRNENHACPILGGSTTFPYPRRGRTGRYPARNDPNSEKPGDVYVPRDENFGHLKSSDFLANSIKVLTRYVLPAFESVFDLNLTPNEFDSFQDVRDLYEGGIRLPTEVISTISPLPVIKELFRTDGEQVLKFPPPHIIQVNKSAWMTDEEFAREMIAGVNPCMIRSLQEFPPKSTLDPTIYGDQNSKITAEVLDLEGCSLEEAINGRRLFILDYHDVFMPYVRRINETHAKAYATRTILFLKEDGTLKPVAIELSLPHPDGDKSGAISEVILPAKEGVESTIWLLAKAYVIVNDSCYHQLMSHWLNTHAVIEPFVIATNRQLSVIHPIYKLLSPHYRDTMNINALARQNLINSDGIIERTFLPSKFSLEMSSAVYKNWVFTDQALPADLIKRGMAVEDSSSPYGIRLVIEDYPYAVDGLEIWFAIKTWVQDYVSLYYPTDNDLRKDPELQNWWKEAVEVGHGDLKDKPWWPKMQTVEELVESCTTIIWTASALHAAVNFGQYPYGGLILNRPTLSRRLLPEQGTAEYEEMVKSHQKAYLRTITPKLETLIDLTTIEILSKHASDEVYLGERDNPHWTFDSRALQAFQRFGNKLSEIEEKLTEKNKDGRLSNRIGPVELPYTLLHPTSNEGLTFRGVPNSISI 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst8g01472 863 PRINTS Plant lipoxygenase signature 306 327 IPR001246 GO:0016491
Arst8g01472 863 PRINTS Plant lipoxygenase signature 776 790 IPR001246 GO:0016491
Arst8g01472 863 PRINTS Plant lipoxygenase signature 168 189 IPR001246 GO:0016491
Arst8g01472 863 PRINTS Plant lipoxygenase signature 240 259 IPR001246 GO:0016491
Arst8g01472 863 PRINTS Plant lipoxygenase signature 207 223 IPR001246 GO:0016491
Arst8g01472 863 PRINTS Plant lipoxygenase signature 142 160 IPR001246 GO:0016491
Arst8g01472 863 PRINTS Plant lipoxygenase signature 390 409 IPR001246 GO:0016491
Arst8g01472 863 PRINTS Plant lipoxygenase signature 351 367 IPR001246 GO:0016491
Arst8g01472 863 PRINTS Plant lipoxygenase signature 454 478 IPR001246 GO:0016491
Arst8g01472 863 ProSitePatterns Lipoxygenases iron-binding region signature 2. 546 556 IPR020834 GO:0016702|GO:0046872
Arst8g01472 863 Gene3D - 365 496 - -
Arst8g01472 863 PRINTS Lipoxygenase signature 539 559 IPR013819 GO:0016702|GO:0046872
Arst8g01472 863 PRINTS Lipoxygenase signature 501 518 IPR013819 GO:0016702|GO:0046872
Arst8g01472 863 PRINTS Lipoxygenase signature 519 536 IPR013819 GO:0016702|GO:0046872
Arst8g01472 863 SUPERFAMILY Lipoxigenase 177 863 IPR036226 -
Arst8g01472 863 Gene3D - 177 275 - -
Arst8g01472 863 Gene3D PLAT/LH2 domain 4 176 - -
Arst8g01472 863 CDD PLAT_LH2 13 173 IPR042057 -
Arst8g01472 863 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 175 863 IPR013819 GO:0016702|GO:0046872
Arst8g01472 863 ProSitePatterns Lipoxygenases iron-binding region signature 1. 519 533 IPR020833 GO:0016702|GO:0046872
Arst8g01472 863 Gene3D - 276 364 IPR027433 -
Arst8g01472 863 FunFam Lipoxygenase 177 275 - -
Arst8g01472 863 FunFam Lipoxygenase 498 862 - -
Arst8g01472 863 FunFam Lipoxygenase 365 496 - -
Arst8g01472 863 ProSiteProfiles PLAT domain profile. 47 172 IPR001024 GO:0005515
Arst8g01472 863 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 12 176 IPR036392 GO:0005515
Arst8g01472 863 SMART LH2_4 13 173 IPR001024 GO:0005515
Arst8g01472 863 Gene3D - 497 862 - -
Arst8g01472 863 PANTHER LIPOXYGENASE 13 863 IPR000907 GO:0016702|GO:0034440|GO:0046872
Arst8g01472 863 MobiDBLite consensus disorder prediction 243 264 - -
Arst8g01472 863 Pfam Lipoxygenase 185 846 IPR013819 GO:0016702|GO:0046872
Arst8g01472 863 PANTHER LIPOXYGENASE 13 863 IPR000907 GO:0016702|GO:0034440|GO:0046872
Arst8g01472 863 Pfam Lipoxygenase 185 846 IPR013819 GO:0016702|GO:0046872
Arst8g01472 863 Pfam PLAT/LH2 domain 81 171 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst8g01472 Arst-Chr8 23862701 23866416 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst8g01472 1 863 Acyl Lipid Metabolism Gene Families AT1G55020 56.674 0.0 1012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst8g01472 K15718 - gmx:547774 1459.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst8g01472 8 23862701 23866416 Arst9g01165 9 13285108 13344428 PCT