Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g04399 ATGGCAATCATCAACATGTATGCAAAATGCACAAACTCCTATGTTGTTGGGTTTGTCTGCACAATTTTGTTGTTGAGATCAGTAGCAGAATGCAGAGAGGTCAATGGTGTATTGGAGAATCTTGAGTACCCTGCAATTAGTTGCAGAAAACACAGTGCAAGTTTGATTGATTTTGGTGGAGTTGGTGATGGCAAAACATCCAATACAAAGGCCTTTCAATATGCAATTGGGAACCTGAGCCATTATGGTTCTGATGGTGGAGCATTGCTTGTTGTGCCACCTGGGAAATGGTTAACAGGAAGCTTCAATCTCACTAGCCATTTCACTCTTTTTCTCCACCGTGACACTATCATCCTCGCGTCTCAGGATGAATCAGAATGGCCTGAACTTTCTGTGCTACCATCATATGGTAGAGGAAGAGATGCTCCTGATGGAAGATTTAGTAGTCTCATTTTTGGAACAAACCTCACTGATGTTGTAGTTACTGGTTATAATGGGACAATTGATGGACAAGGCTCTTATTGGTGGGATAAGTTTCATAAGGGTGAATTGAAATTTACTAGACCATATATGATTGAGATTATGTTCTCTGATCACATTCAGATATCAAATCTCACTTTGATCAACTCCCCATCTTGGTTTGTCCATCCAATTTACAGCAGTGACATCATAATTCAAGGACTCACCATTGCTGCACCAACTGACTCTCCCAACACAGATGGAATAGACCCTGATTCTTGTACCAATACAAGGATTGAAGACTGCAATATTGTCTCTGGTGATGATTGTATTGCAGTTAAGAGTGGTTGGGATGAGTATGGAATAAAATTTGGAATGCCAAGCCAACACATAGTAATTAGAAGGCTTACATGTGTATCCCCTGATAGTGCTATGATTGCATTAGGCAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGCCGAAAACCTCACTGCTATCGATACTGAATCGGCCGTTAGGATCAAAACTGCAGTTGGTAGAGGAGGATATGTTAAGGACATATTTGTTAAGGGAATGAACTTGAACAACATGAAATATGTGTTTTGGATAACAGGTTCTTATGGATCACACGCTGACAATGATTTTGATCCAAAAGCACTTCCTGATATTAGTGGCATAAACTATAGAGATGTCATAGCAGATTACTGCAATTATACAGCAAAACTTGAAGGGATTCCTAATGATCCTTTTACAGGAATCTGTGTATCTAATGTGAGTATCACAAATAGTGACATGAAGAAATTGCAATGGAATTGCACTGATGTTGAAGGTGTTTCAAGCAATGTTAGTCCTGTCCCTTGTGAATTGCTATCACAGAAGGAAGAGAAGAAATTTGATTGTCCTTTTCCAGATGAAAAACTTCCCATTGAAAGTGTTATGTTGAAGACTTGTTCCTTTAAAAGTGTCTAA 1431 0.392 MAIINMYAKCTNSYVVGFVCTILLLRSVAECREVNGVLENLEYPAISCRKHSASLIDFGGVGDGKTSNTKAFQYAIGNLSHYGSDGGALLVVPPGKWLTGSFNLTSHFTLFLHRDTIILASQDESEWPELSVLPSYGRGRDAPDGRFSSLIFGTNLTDVVVTGYNGTIDGQGSYWWDKFHKGELKFTRPYMIEIMFSDHIQISNLTLINSPSWFVHPIYSSDIIIQGLTIAAPTDSPNTDGIDPDSCTNTRIEDCNIVSGDDCIAVKSGWDEYGIKFGMPSQHIVIRRLTCVSPDSAMIALGSEMSGGIQDVRAENLTAIDTESAVRIKTAVGRGGYVKDIFVKGMNLNNMKYVFWITGSYGSHADNDFDPKALPDISGINYRDVIADYCNYTAKLEGIPNDPFTGICVSNVSITNSDMKKLQWNCTDVEGVSSNVSPVPCELLSQKEEKKFDCPFPDEKLPIESVMLKTCSFKSV 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g04399 476 Pfam Glycosyl hydrolases family 28 149 430 IPR000743 GO:0004650|GO:0005975
Arst5g04399 476 Gene3D - 33 438 IPR012334 -
Arst5g04399 476 PANTHER PECTIN LYASE-RELATED 21 464 - -
Arst5g04399 476 SMART pbh1 409 431 IPR006626 -
Arst5g04399 476 SMART pbh1 247 268 IPR006626 -
Arst5g04399 476 SMART pbh1 220 246 IPR006626 -
Arst5g04399 476 SUPERFAMILY Pectin lyase-like 45 446 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g04399 Arst-Chr5 105403726 105406710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g04399 19 474 Glycoside Hydrolase AT3G61490 65.517 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g04399 - - gmx:100785005 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g04399 5 105403726 105406710 Arst9g03084 9 108294589 108302035 PCT