Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00448 ATGAAGTTTTGCAATTTCTTTACATTCACCTTGGCTTTAATAGTAGTGCTTCAAGCCTTAGGTGCAAGTGCGGACGATGCTGGAACCATAATCACTCAGCCTCTCTATAATGAATTCCTGAAGCACTTAACCGATTCCAGATGCGAAGCCCATGGCTTCTACACCTACAATGCTTTTGTCACCGCCGCCAGAGCATTTCCCGCCTTTGGAACAACCGGTGATGACGTCACTCGCAAGCGAGAACTCGCCGCCTTCTTCGGCCAAACATCACACGAGACAACAGGAGGAACGACTAATGCTCCAGATGAATTTGAATGGGGTTATTGCTTTTTGAGGGAACAGACTAAAGAACAGCACTGTGATTCTACACAAGCACCATGCCCCGCTGGCAAGCAATATTATGGCCGTGGTCCCATTCAGCTTACAAGCAACTCCAACTATCAGCTGGCTGGACAAGCTATAAAGGCAGATTTGATAAACAATCCAGACTTGGTAGCAACAGATGCGGTAATATCATTCAAAACAGCTATATGGTTTTGGATGACACCACAAGGGAACAAGCCCTCGTGCCACGACGTCATCACCAATGCATGGAGGCCGACCGCCACTGACTCGGCGGCAGGTCGAGCCCCAGGCTACGGTGTCATCACCAACATAATCAACGGTGGGATTGAATGTGGGAAAGGTGCCAACACAAACTCCAATAATAGAATTGGATTTTACAAGAGGTACTGTGATATCTTGAAGATTGGCTATGGGAGTAACTTAGATTGTGCAAATCAACAGCACTTTTAA 795 0.4679 MKFCNFFTFTLALIVVLQALGASADDAGTIITQPLYNEFLKHLTDSRCEAHGFYTYNAFVTAARAFPAFGTTGDDVTRKRELAAFFGQTSHETTGGTTNAPDEFEWGYCFLREQTKEQHCDSTQAPCPAGKQYYGRGPIQLTSNSNYQLAGQAIKADLINNPDLVATDAVISFKTAIWFWMTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGIECGKGANTNSNNRIGFYKRYCDILKIGYGSNLDCANQQHF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00448 264 SUPERFAMILY Lysozyme-like 28 264 IPR023346 -
Arst5g00448 264 PANTHER CHITINASE-RELATED 25 262 - -
Arst5g00448 264 PIRSF Endochitinase 3 264 IPR016283 GO:0004568|GO:0005975
Arst5g00448 264 Pfam Chitinase class I 30 258 IPR000726 GO:0004568|GO:0006032|GO:0016998
Arst5g00448 264 Gene3D - 35 264 - -
Arst5g00448 264 ProSitePatterns Chitinases family 19 signature 2. 171 181 IPR000726 GO:0004568|GO:0006032|GO:0016998
Arst5g00448 264 ProSitePatterns Chitinases family 19 signature 1. 48 70 IPR000726 GO:0004568|GO:0006032|GO:0016998
Arst5g00448 264 CDD chitinase_GH19 31 258 - -
Arst5g00448 264 Gene3D Endochitinase, domain 2 112 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00448 Arst-Chr5 3803044 3804903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00448 26 264 Glycoside Hydrolase AT3G12500 61.157 8.26e-106 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00448 K20547 - csv:101215333 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00448 5 3803044 3804903 Arst1g01032 1 10314990 10320131 PCT