LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst4g01747	ATGGCCACTGCCCAAAACGGCACCGTCACAGCAACCACCATCACCGACGCAAACAATTCGACTCAGGAACCGGCCACCGCCCTCGGAGCCACGACTGCTGAGAAGAGATGGCCTGGTTGGCCTGGGGAGTGCGTGTTCCGGCTGATCGTGCCGATGGGCAAGGTCGGCAGCATCATCGGTCGCAAGGGTGAGCTCGTCAAGAAGACCTGCGAAGACACACGCGCCCGCATTCGCGTCCTCGACGCCCCTCTCGGCACTCCCGATCGAGTTGTACTGATAACTGGGAAGGAAGAGCCAGAGGCAGCTCTTTCCCCTGCAATGGATGCTACGATAAGAATATTTAAGCGTATCTCTGGGTTATCTGAAACTGACAGTGACAACAAAGGATCTGCCGGGGTTGTATTTTGTTCCATCCGCTTGTTGGTGGCATCAACACAAGCTGTCAATTTGATTGGAAAACAAGGATCGTTAATCAAATCTATGCAGGAGAGTAGTGGTGCTTCTATTAGGGTATTGTCAGCAGATGAGACGCAATTTCATGCTGCTACCACGGATGAGAGGATTGTGGAACTTCAGGGAGAAGCCTTGAAAGTCCTTAAAGCTCTGGAAGCAGTGGTTGGCCACCTAAGAAGGTTTTTGGTTGATCATAGTGTTCTTCCTCTATTTGAGAAACCTTACACCGCCCCAACCACACAACCCCATCAAGCAGAGACCTTGGCCGACAAGTCATTGCATATTGCTTCTCAAACTAGCATTTTTTCAGATATTTCTCTTCCAACGAAAAGGGATTCTGTCTTTGCTGATCGTGGAAGTCTTTTGGACTCATTACTTCCTTCCTCCACTGTGTCTGTCTACGGGCAAGATTCTTCACTTTCTGCTGTTCGATCTTCGGCACTTACTCCACTTAGTCGTGCTGCTGCTCCTATTGTTAGTACGGTAGTACAAACCATGCAAATACCATTGTCATACGCGGAGGACATCATTGGTGTTCAAGGGACTAATATTGAATACATTCGTCGAACTAGTGGAGCGATATTGACTGTGCAGGAGAGCAGGGTGCCTGATGAAATTGTTGTGGAAATAAAAGGCTCCTCATCTCAAGTTCAGACGGCAGAGCAATTGATTCAGGAAGTGATAAGCAACCACAAAGATCCTGTTGCAAGCAGTTATGGAAGAGTAGATGCAGGTTTGAGGTCTTCGTACGCTGCAGTGGGCGAGACAGGTTTGGGGTCTTCATACTCTACGGTGGGAGACACAGGTTTGAGGTCTTCATACGCCACACTGGGCGATGTAGGTTTGAGGAATTCATACTCTACGGTGGGCACTGCATCACGCCCTGCACCGTCCTTGACTTCACAACCTTACTCAGGTTATGGAGCTTCTAGTTTAGGAGACTATAGTACTTTCAGACTTTAA	1416	0.4887	MATAQNGTVTATTITDANNSTQEPATALGATTAEKRWPGWPGECVFRLIVPMGKVGSIIGRKGELVKKTCEDTRARIRVLDAPLGTPDRVVLITGKEEPEAALSPAMDATIRIFKRISGLSETDSDNKGSAGVVFCSIRLLVASTQAVNLIGKQGSLIKSMQESSGASIRVLSADETQFHAATTDERIVELQGEALKVLKALEAVVGHLRRFLVDHSVLPLFEKPYTAPTTQPHQAETLADKSLHIASQTSIFSDISLPTKRDSVFADRGSLLDSLLPSSTVSVYGQDSSLSAVRSSALTPLSRAAAPIVSTVVQTMQIPLSYAEDIIGVQGTNIEYIRRTSGAILTVQESRVPDEIVVEIKGSSSQVQTAEQLIQEVISNHKDPVASSYGRVDAGLRSSYAAVGETGLGSSYSTVGDTGLRSSYATLGDVGLRNSYSTVGTASRPAPSLTSQPYSGYGASSLGDYSTFRL	471

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst4g01747	471	CDD	KH-I_PEPPER_rpt2_like	139	210	-	-
	Arst4g01747	471	Pfam	KH domain	315	377	IPR004088	GO:0003723
	Arst4g01747	471	Pfam	KH domain	138	205	IPR004088	GO:0003723
	Arst4g01747	471	Pfam	KH domain	46	99	IPR004088	GO:0003723
	Arst4g01747	471	Gene3D	-	43	213	-	-
	Arst4g01747	471	ProSiteProfiles	Type-1 KH domain profile.	312	375	-	-
	Arst4g01747	471	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	37	98	IPR036612	GO:0003723
	Arst4g01747	471	SMART	kh_6	134	210	IPR004087	GO:0003676
	Arst4g01747	471	SMART	kh_6	311	380	IPR004087	GO:0003676
	Arst4g01747	471	SMART	kh_6	42	115	IPR004087	GO:0003676
	Arst4g01747	471	MobiDBLite	consensus disorder prediction	1	24	-	-
	Arst4g01747	471	CDD	KH-I_PEPPER_rpt1_like	43	109	-	-
	Arst4g01747	471	ProSiteProfiles	Type-1 KH domain profile.	43	110	-	-
	Arst4g01747	471	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	307	381	IPR036612	GO:0003723
	Arst4g01747	471	Gene3D	K Homology domain, type 1	310	385	IPR036612	GO:0003723
	Arst4g01747	471	ProSiteProfiles	Type-1 KH domain profile.	135	205	-	-
	Arst4g01747	471	PANTHER	KH DOMAIN CONTAINING RNA BINDING PROTEIN	34	402	-	-
	Arst4g01747	471	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	135	216	IPR036612	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst4g01747	Arst-Chr4	29564089	29569860	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst4g01747	K21444		-	gmx:100815466	607.446

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst4g01747	4	29564089	29569860	Arst4g01747	4	29564089	29569860	ECH
	Arst1g02791	1	89704260	89708220	Arst4g01747	4	29564089	29569860	PCT