Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g01349 ATGCTTGTGGCATTGCTCTTGCTTCTGGCATGGAGCAATGCCGTGATAATTGTTGATGGATATGGTGGACAATGTAGTTTGAATCCAACACTTGATCCTAGACCACACAGTGTCTCAATTCTTGAGTTTGGTGCTGTTGGAGATGGCAAAACACTCAACACAATCCCTTTCCAAAATGCTGTCTTCTATCTCAAGTCATTCGCTGATAAAGGCGGCGCTCAGCTCTATGTGCCGCCCGGAAAATGGCTCACAGGAAGCTTCAACCTCACTAGCCACCTTACCCTTTTTTTGGAAAAAGGTGCTACTATTATTGGATCTCAGGATCCAACTCATTGGGATGTTGTAAAGCCCTTACCTTCTTATGGCCGAGGGCTCGAAGTTCCCGGGGGACGATACCAGAGCTTGATCAATGGATACCAGTTACATGATGTGGTCATAACAGGTAACAATGGAACCATCAACGGCATGGGATCTGTTTGGTGGGAGTGGTTTACCTTGCATACACTGAATCATAGCCGTCCTCATCTGATTGAACTCGTCGAATCTGATTATGTGGTAGTTTCAAATCTCACAATCTTGAATGCCCCGGCATACGCAATACACCCTGTTTATTGCAGCTATGTACATATTCAAAATGTATCAATTTCTGCTCCTGCAGAATCACCTTTTACTGTTGGTATAGTTCCTGATTCTTCTAATAATGTTTGTATAGAAGATTGCATTGTTGCTATGGGACATGATGCAATTTCTCTTAAAAGTGGTTGGGATGAGTATGGTGTTGCCTATGGTAGACCAACAGAGAATGTACACATTAGAAGGGTGACTTTGAGTGCATTTTCTGGCTCTACTCTTGCATTTGGTAGTGAAATGTCTGGTGGTCTTTCGAATGTTTTCGTGGAACATTCTCATGTTCTCGACTCAGATAAAGGCGTCCAGTTCAGAACAACCAGAGGTAGAGGTGGTTACATGAAAGAAATTGTTATATCTGACATACAAATGGACAATGTCTATGTTGCGATTGCGGCCACAGGTCATTGTGGATCTTCGGATTTTGTCAATCCTGAACCTTGTCCAGAACTTCGGAACCCTACAAACTCTTCCTCGTCGTGTTTCTACTTACTGAGTACCAGTGGAAGAAAAGCCTCAGCACTGTGA 1155 0.4338 MLVALLLLLAWSNAVIIVDGYGGQCSLNPTLDPRPHSVSILEFGAVGDGKTLNTIPFQNAVFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGATIIGSQDPTHWDVVKPLPSYGRGLEVPGGRYQSLINGYQLHDVVITGNNGTINGMGSVWWEWFTLHTLNHSRPHLIELVESDYVVVSNLTILNAPAYAIHPVYCSYVHIQNVSISAPAESPFTVGIVPDSSNNVCIEDCIVAMGHDAISLKSGWDEYGVAYGRPTENVHIRRVTLSAFSGSTLAFGSEMSGGLSNVFVEHSHVLDSDKGVQFRTTRGRGGYMKEIVISDIQMDNVYVAIAATGHCGSSDFVNPEPCPELRNPTNSSSSCFYLLSTSGRKASAL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g01349 384 Pfam Glycosyl hydrolases family 28 134 340 IPR000743 GO:0004650|GO:0005975
Arst4g01349 384 Gene3D - 28 382 IPR012334 -
Arst4g01349 384 PANTHER PECTIN LYASE-RELATED 24 362 - -
Arst4g01349 384 SMART pbh1 294 315 IPR006626 -
Arst4g01349 384 SMART pbh1 232 253 IPR006626 -
Arst4g01349 384 SMART pbh1 182 204 IPR006626 -
Arst4g01349 384 SMART pbh1 323 344 IPR006626 -
Arst4g01349 384 SMART pbh1 266 288 IPR006626 -
Arst4g01349 384 SMART pbh1 205 231 IPR006626 -
Arst4g01349 384 SUPERFAMILY Pectin lyase-like 32 355 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g01349 Arst-Chr4 14865975 14868572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g01349 1 348 Glycoside Hydrolase AT3G16850 65.805 4.04e-167 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g01349 - - adu:107483516 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g01349 4 14865975 14868572 Arst4g01349 4 14865975 14868572 ECH
Arst1g03379 1 94857027 94859795 Arst4g01349 4 14865975 14868572 PCT