Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g03379 ATGCTAGTGGCACTAGTGTTGCTGCTGGCATTGAGCAATGAAGTAAGAGTTAATGGTTATGGTGGTTCTGAGCAATGTGAGTATAGTCCAGAACTAGCTCCAAGACCACACAGTGTGTCTATTTTGGAGTTTGGTGCTGTTGGGGATGGAAAGACACTGAATACCATTGCATTCCAGAATGCAATATTCTATCTCAAGTCATTCGCCGATAAGGGCGGCGCTCAGCTTTATGTGCCGCCTGGACAATGGCTCACTGGAAGCTTCAACCTCACTAGCCATCTTACCCTCTTTCTAGAAAGAGGTGCTGTCATTATTGGATCTCAGGATCCATTTCATTGGGAAGTTATTGATCCTTTACCTTCTTATGGACGAGGAATCGAAGCTCCCGGCGGAAGATACCTTAGCTTGATAAATGGATACATGTTAAATGATGTGGTCATTACAGGCAACAATGGGACCATAGATGGTGTTGGATCGATTTGGTGGCGATCCTTTATTTCTCATTCCCTGAACTATAGTCGACCTCATCTAATCGAATTAGTCGCATCTAACTCGGTGGTAGTTTCAAATATCACATTCCTGAATACCCCTGCATATGGCATCCACCCAGTTTATTGCAGCAATGTACATATTCACAATATTTCAATATCAGCTCCTTCAGAATCCCCTTTCACTGTTGGCATAGTACCAGATTCTTCTGATAATGTGTGTATAGAAGATTGTACAATTAGCATGGGGTTTGATGCAATTGCACTCAAAAGTGGCTGGGATGAGTATGGCATTGCCTATGGCAGGCCTACAAAAAATGTGCACATCAGAAGGGTGCATCTCCAATCTTCTTCCGGCTCTACTCTTGCGTTTGGCAGCGACATGTCTGGCGGCATTTCGAATGTCCTAGTGGAGCATGTTCATCTCTACAACTCAAAAACCGGCATTGTGTTCAGAACCACCAGGGGAAGAGGTGGTTACATGAAGGAGATAGTTATATCAGACATAGAAATGGAGAACATATACCGAGCGATCGCGGCCACAGGCCACTGTGGATCTCATCCTGATGACAAGTTTGATCCTAATGCTCTCCCACACTTGGATCAAATTATATTGAAGAACATGACTGGGACAAACATCACTATTGCTGGAACCTTTTCTGGACTAGAAGAATCTCCTTTTACTAACATATGCCTTTCAAATCTAAACTTCTCTCTCAATTCTATGTCTCCCTTTACATGGGAATGCTCAAATGTCTCTGGATTCTCTGAATCTGTTGTCCCAAAACCTTGTCTTGATCTTGAGACCCCTTCAGTTTCTTACACAGCATGTTCCTCCATGCTAAGCAATAGAGCAAAGGCAACAACACAAGCTTCATATTCTTCTGCTTGA 1380 0.4326 MLVALVLLLALSNEVRVNGYGGSEQCEYSPELAPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGQWLTGSFNLTSHLTLFLERGAVIIGSQDPFHWEVIDPLPSYGRGIEAPGGRYLSLINGYMLNDVVITGNNGTIDGVGSIWWRSFISHSLNYSRPHLIELVASNSVVVSNITFLNTPAYGIHPVYCSNVHIHNISISAPSESPFTVGIVPDSSDNVCIEDCTISMGFDAIALKSGWDEYGIAYGRPTKNVHIRRVHLQSSSGSTLAFGSDMSGGISNVLVEHVHLYNSKTGIVFRTTRGRGGYMKEIVISDIEMENIYRAIAATGHCGSHPDDKFDPNALPHLDQIILKNMTGTNITIAGTFSGLEESPFTNICLSNLNFSLNSMSPFTWECSNVSGFSESVVPKPCLDLETPSVSYTACSSMLSNRAKATTQASYSSA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g03379 459 Gene3D - 25 421 IPR012334 -
Arst1g03379 459 Pfam Glycosyl hydrolases family 28 136 416 IPR000743 GO:0004650|GO:0005975
Arst1g03379 459 SUPERFAMILY Pectin lyase-like 32 432 IPR011050 -
Arst1g03379 459 PANTHER PECTIN LYASE-RELATED 14 445 - -
Arst1g03379 459 SMART pbh1 295 316 IPR006626 -
Arst1g03379 459 SMART pbh1 267 289 IPR006626 -
Arst1g03379 459 SMART pbh1 233 254 IPR006626 -
Arst1g03379 459 SMART pbh1 206 232 IPR006626 -
Arst1g03379 459 SMART pbh1 183 205 IPR006626 -
Arst1g03379 459 SMART pbh1 324 345 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g03379 Arst-Chr1 94857027 94859795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g03379 1 457 Glycoside Hydrolase AT3G16850 59.956 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g03379 - - gmx:100802343 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g03379 1 94857027 94859795 Arst1g03379 1 94857027 94859795 ECH
Arst1g03379 1 94857027 94859795 Arst4g01349 4 14865975 14868572 PCT