Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05987 ATGGTAATATTATATCTGAACGTGTTAATGATCATTTCAAAAATGCCTGGATGCATTGCTGGTAAGAAGTGGTTCACAGAACCGAATATGTGTTTTTCTAATTTACCCAATAAGGAAAATCAAACACTTTCTAAGAGCAAGCATTCTGTGCGCTCTGAGTTATCGGATAAGGATGATGATAGCTCGATTCTACCTCGGCTGCCTGATGATGTTTCCAAGTATTGCTTAGCACTTGTGCCTCATTCGGACCTCCCGGCTATGGCCGGTGTTTGTAAGAGATGGAGGTGTTTCATTCAGAGCAAAGAATTCATAATGGTAAGAAAATTGGCTGGCTTGGTTGAGGAATGGCTTTTCCTGTTAACTGCAGATAAAGAAGGGAAAGGAAGCCATTGGGAGGTAATGGATTGTGAGGGTCAGAATCGTCGATCTCTTCCACCAATGCCTGGTCCAACAAAGGCTGGATTTGGGGTGGTGGTTGTTAATGGGAAGCTACTTGTCATGGCTGGCTATTCAGTTATTGATGGAACTGCCACTGCCTCAGCAGAGGTTTACCAATACAATTCTTGTGTCAACAGTTGGAGCAGGTTATCAAACATGAATGTGGCTCGATATGACTTTGCTTGCGCTGAGGTCAATGGCTTGGTGTACGCTGTTGGAGGCAACGGAGTAGATGGCGACAGCCTCTCCAGTGTGGAGGTCTATGATTCAGAAACTGACAAGTGGACATTGATTGAGAGCCTTCGTCGGCCGAGACGAGGTTGCTTCGCGTGTGGATTCGAGGGGAAGCTCTACGTGATGGGTGGAAGGTCGAGTTTTACAATTGGAAACTCAAAATTTGTTGATGTTTACAATCCTGAAAGGCACAGTTGGTGTGAGATGAAAAATGGTTGTGTCATGGTGACTGCTCATGCAGTACTGGGAAAGAAGCTGTTCTGTATGGAGTGGAAGAATCAGAGGAAGTTGGCAATCTTCAATTCAGAGGACAATACATGGAAAATGGAGCCTCTACCTTTGACTGGGAGCTCCAGTATCGGTTTCCGGTTCGGAATTCTTGATGGTAAACTCTTGCTGTTCTCACTGGAGGAGGAACCTACATGCAAAACTTTGTTGTATGATCCAAATGCAGCCCCTGGATCGGAGTGGCAAACAAGTGAGATCAAACCATCTGGGTTATGCTTGTGCAGTGTAACAGTCAAAGCATGA 1203 0.4505 MVILYLNVLMIISKMPGCIAGKKWFTEPNMCFSNLPNKENQTLSKSKHSVRSELSDKDDDSSILPRLPDDVSKYCLALVPHSDLPAMAGVCKRWRCFIQSKEFIMVRKLAGLVEEWLFLLTADKEGKGSHWEVMDCEGQNRRSLPPMPGPTKAGFGVVVVNGKLLVMAGYSVIDGTATASAEVYQYNSCVNSWSRLSNMNVARYDFACAEVNGLVYAVGGNGVDGDSLSSVEVYDSETDKWTLIESLRRPRRGCFACGFEGKLYVMGGRSSFTIGNSKFVDVYNPERHSWCEMKNGCVMVTAHAVLGKKLFCMEWKNQRKLAIFNSEDNTWKMEPLPLTGSSSIGFRFGILDGKLLLFSLEEEPTCKTLLYDPNAAPGSEWQTSEIKPSGLCLCSVTVKA 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05987 400 Pfam Kelch motif 153 200 IPR006652 GO:0005515
Arst3g05987 400 Pfam Kelch motif 202 247 IPR006652 GO:0005515
Arst3g05987 400 SMART kelc_smart 163 213 IPR006652 GO:0005515
Arst3g05987 400 SMART kelc_smart 262 307 IPR006652 GO:0005515
Arst3g05987 400 SMART kelc_smart 214 261 IPR006652 GO:0005515
Arst3g05987 400 Gene3D - 103 398 IPR015915 GO:0005515
Arst3g05987 400 ProSiteProfiles F-box domain profile. 61 109 IPR001810 GO:0005515
Arst3g05987 400 Pfam Kelch motif 250 295 IPR011498 GO:0005515
Arst3g05987 400 CDD F-box_AtAFR-like 63 107 - -
Arst3g05987 400 PANTHER OS02G0202900 PROTEIN 26 396 IPR045887 -
Arst3g05987 400 SUPERFAMILY F-box domain 50 103 IPR036047 GO:0005515
Arst3g05987 400 SUPERFAMILY Kelch motif 114 359 IPR015915 GO:0005515
Arst3g05987 400 Pfam F-box domain 65 102 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05987 Arst-Chr3 133402328 133404132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05987 67 245 Miscellaneous Gene Families AT4G33900 27.835 6.79e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05987 - - adu:107482114 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g05987 3 133402328 133404132 Arst3g05987 3 133402328 133404132 ECH
Arst10g00883 10 7961789 7963618 Arst3g05987 3 133402328 133404132 PCT