Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03948 ATGAAGATGAAGCTGGGATGGTTGGTTGTGACAGTTATGGTTTTGAACCTGTCAAGTCCTTGCTCAGCATGGTTTGGTTTTGGCAACAAACAAAAGACTTCAAAGAACTCTATTCTGCCAGCTCAGCCCTCCATCATCAACCGTGCTGCCCATGGTTCCTCCATTATCATCCCACTTTACGGCAATGTTTATCCTGTTGGGTTCTATAATGTTACTCTCAGCATTGGGCAGCCACCAAGGTCCTATTTTCTGGATGTTGACACCGGTAGTGACCTCACATGGCTTCAATGCGATGCCCCTTGTTCCCATTGCTCTGAGACTCCCCATCCACTGTACAAGCCCAGCAATGATTTTGTGCCGTGTAAAGATCCCCTATGCGCGTCGTTGCAGCCGAGTGATGACTACGAATGTGAAAGCCCTGATCAGTGTGACTATCAGATTGATTATGCGGATCAGTACTCAACACTTGGTGCACTTGTCAATGATGTCTATCTTCTCAACTTCACCAATGATGTCCAACTTAAAGTTCGGATGGCACTTGGATGTGGATATGATCAGACTTTTTCGCCTTCTTACCACCCGTTAGACGGAATACTTGGGATTGGCAGGGGAAAAACCAGCTTGGTGTCACAGCTGAATGGTCAGGGCTTGGTGCAAAATGTTGTTGGACACTGCTTAAGTTCCCAAGGAGGAGGATATGTTTTCTTCGGAAATGTCTATGGTTCTTTTCGAGTGAGCTGGACTCCAATGTCATCCACAGATTCAAAACATTACTCAGCAGGGCCAGCTGAACTTGCTTTTGGAGGAAAGAAGAGTCGTTCTGGAAGCCTAACTGTTCTTTTCGACACTGGCAGTTCTTACACTTACTTCAACTCCAAGGCTTACAAAGCTCTCATTTCTTGGTTGAAGAAGGAATTGCACAAAGTACCCATAAGTGTAGCAGCTGATGATCAAACCTTACCAATATGCTGGCGTGGTAAAAAACCTTTCCAGAGCATACGTGAAGTGAAGAGATACTTTAAGCCGCTGGCGCTTACTTTTAGCAATGCTGGAAAAGTTAAAACTCTGTTTGAGATCCCTCTTGAAGGTTATCTGATACTATCAAACATGGGAAATGTTTGCCTGGGAATTCTGAATGGCTCTGAAGTAGGGTTGGGAGATCTCAACATAATTGGAGACATATCCATGCAAGACAAAGTGATGGTATTCGACAATGAGAAGCACTTAATTGGTTGGGCACCTGCAGATTGTACTCGTCTTCCAAGATCAAGAGGTTTCGGTATTTTATCATACTGA 1296 0.4452 MKMKLGWLVVTVMVLNLSSPCSAWFGFGNKQKTSKNSILPAQPSIINRAAHGSSIIIPLYGNVYPVGFYNVTLSIGQPPRSYFLDVDTGSDLTWLQCDAPCSHCSETPHPLYKPSNDFVPCKDPLCASLQPSDDYECESPDQCDYQIDYADQYSTLGALVNDVYLLNFTNDVQLKVRMALGCGYDQTFSPSYHPLDGILGIGRGKTSLVSQLNGQGLVQNVVGHCLSSQGGGYVFFGNVYGSFRVSWTPMSSTDSKHYSAGPAELAFGGKKSRSGSLTVLFDTGSSYTYFNSKAYKALISWLKKELHKVPISVAADDQTLPICWRGKKPFQSIREVKRYFKPLALTFSNAGKVKTLFEIPLEGYLILSNMGNVCLGILNGSEVGLGDLNIIGDISMQDKVMVFDNEKHLIGWAPADCTRLPRSRGFGILSY 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03948 431 Gene3D Acid Proteases 238 420 IPR021109 -
Arst3g03948 431 Pfam Xylanase inhibitor N-terminal 69 238 IPR032861 -
Arst3g03948 431 ProSiteProfiles Peptidase family A1 domain profile. 69 413 IPR033121 -
Arst3g03948 431 PANTHER ASPARTYL PROTEASES 58 411 IPR001461 GO:0004190|GO:0006508
Arst3g03948 431 Gene3D Acid Proteases 51 237 IPR021109 -
Arst3g03948 431 FunFam Aspartic proteinase Asp1 isoform A 241 421 - -
Arst3g03948 431 SUPERFAMILY Acid proteases 61 420 IPR021109 -
Arst3g03948 431 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 279 290 IPR001969 GO:0004190|GO:0006508
Arst3g03948 431 PRINTS Pepsin (A1) aspartic protease family signature 75 95 IPR001461 GO:0004190|GO:0006508
Arst3g03948 431 PRINTS Pepsin (A1) aspartic protease family signature 389 404 IPR001461 GO:0004190|GO:0006508
Arst3g03948 431 PRINTS Pepsin (A1) aspartic protease family signature 279 290 IPR001461 GO:0004190|GO:0006508
Arst3g03948 431 Pfam Xylanase inhibitor C-terminal 272 413 IPR032799 -
Arst3g03948 431 FunFam Aspartyl protease family protein 45 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03948 Arst-Chr3 111493882 111496868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03948 53 423 Miscellaneous Gene Families AT1G44130 51.596 2.02e-141 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03948 - - ahf:112733039 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g03948 3 111493882 111496868 Arst3g03948 3 111493882 111496868 ECH
Arst3g03948 3 111493882 111496868 Arst8g03637 8 46782906 46784829 ECH