Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g03062 ATGGTGGAAGAAAACACAACACCAACATCAACAACAAAACATGATTTTTTCGAAACCCAAGCCGTCTTGGACTTGAAGCGTTGGTTCCAAGCAATCATATCCTCACACAAGACCCTCTTTACACTCCTATGGCTGGCGGCGTTCACCTCCGCCTTCCTGTGGCAGAGGGATGCCGTTAGTGGGTTGGTGGTGATGCACGGTGGCGGTGAGTCTCTTAAGAAGAGTGAAAGTTCATTGTTGTATCCTAAGCTGAGGCCCGTGGGCTTCAGCTTAGTGGATTTCGGTGGCGTTGGCGACGGCGTTACCATGAACACTAAGGCGTTTGAGAGGGCGGTTTCAGAGATTTCTAAGTTGGGAGAGAAGGGTGGTGGGCAGCTGAATGTGCCCCCTGGTAGGTGGCTCACTGCACCTTTTAATCTCACCAGTCATATCACTCTTTTTCTTCATCAAGATGCTGTCATTCTTGGAGTTCAGGATGAAAAGTACTGGCCACTGGTGCCTGCATTGCCTTCATATGGATATGGAAGGGAGCATCCTGGCCCTCGTTACACCAGCTTGATCCATGGCCAAAATCTTACTGATGTTGTCATAACAGGGCATAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAATATCTGCAGAAGGTTCTGAACCATACAAGGGGTCCACTGGTTCAGATCTTATGGTCTAGTGACATTCTTATAACTAACATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCATACGATTGCAAGAATGTTACAATCAAAAACCTTACAATTTTGGCTCCTGTGTATCGTGCACCAAATACTGATGGCATTGATCCTGATTCATGTGAAGATATGTTGATAGAGAACTGTTACATAAGCGTGGGAGATGATGCAATTGCCATAAAAAGTGGGTGGGATCAGTATGGAATTGCTTATGGAAAGCCTTCAAAGAATATAGTAATCCGAAACCTTGTTGTTCGATCTAATGTTAGTGCCGGCATCTCAATAGGCAGCGAAATGTCCGGCGGTGTATCGAACGTGACGGTGGAGAACATCCTTGTATGGAAATCCAGGCGTGCTATTCGGATCAAGACAGCGCCGGGAAGAGGCGGCTTCGTGCGCCAAATATCTTACAAGAATCTGACCTTTGAGAATTGCAGAGTTGGAATTGTCGTCAAAACAGACTACAACCAACACCCTGACGCCGGATACGACCCGAAAGCGCTTCCTCTTCTCGAGGACATAAGCTTCACGGGCGTCCGGGGCCAGGCAGTTCGAGTGCCGGTACGGATTCAAGGCAGCCAGGACATTCCTGTTAGAAATGTGACTTTTAAGGACATGTTTGTCGGATTAATTTCGAAGAGGGTGAAGAAGAAGAAACATATCTTCCAGTGTGCCTTTGTCCGTGGTCAAGTAATAGGGACTATCTTCCCTGCCCCTTGTGAGAACTTTGATCAGTACAATGAACAAGGGCAGCTAGTTAAGCATGCCGTATCATGGAATGTCACAGATATAGATTACCAAATATGA 1536 0.4648 MVEENTTPTSTTKHDFFETQAVLDLKRWFQAIISSHKTLFTLLWLAAFTSAFLWQRDAVSGLVVMHGGGESLKKSESSLLYPKLRPVGFSLVDFGGVGDGVTMNTKAFERAVSEISKLGEKGGGQLNVPPGRWLTAPFNLTSHITLFLHQDAVILGVQDEKYWPLVPALPSYGYGREHPGPRYTSLIHGQNLTDVVITGHNGTINGQGQTWWTKYLQKVLNHTRGPLVQILWSSDILITNITLRDSPFWTLHPYDCKNVTIKNLTILAPVYRAPNTDGIDPDSCEDMLIENCYISVGDDAIAIKSGWDQYGIAYGKPSKNIVIRNLVVRSNVSAGISIGSEMSGGVSNVTVENILVWKSRRAIRIKTAPGRGGFVRQISYKNLTFENCRVGIVVKTDYNQHPDAGYDPKALPLLEDISFTGVRGQAVRVPVRIQGSQDIPVRNVTFKDMFVGLISKRVKKKKHIFQCAFVRGQVIGTIFPAPCENFDQYNEQGQLVKHAVSWNVTDIDYQI 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g03062 511 Gene3D - 70 470 IPR012334 -
Arst3g03062 511 PANTHER PECTIN LYASE-RELATED 56 494 - -
Arst3g03062 511 SUPERFAMILY Pectin lyase-like 80 484 IPR011050 -
Arst3g03062 511 SMART pbh1 346 367 IPR006626 -
Arst3g03062 511 SMART pbh1 284 305 IPR006626 -
Arst3g03062 511 SMART pbh1 375 396 IPR006626 -
Arst3g03062 511 SMART pbh1 256 283 IPR006626 -
Arst3g03062 511 SMART pbh1 318 340 IPR006626 -
Arst3g03062 511 Pfam Glycosyl hydrolases family 28 184 453 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g03062 Arst-Chr3 50187358 50192000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g03062 30 511 Glycoside Hydrolase AT3G42950 70.287 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g03062 - - adu:107479176 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g03062 3 50187358 50192000 Arst3g03062 3 50187358 50192000 ECH
Arst1g02630 1 88191153 88195564 Arst3g03062 3 50187358 50192000 PCT