Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g02630 ATGATGGTGGACACCTCAACGCTTGGGCGCTTCCACCACCAAAGACTCGAATTCAAGCGCTGTCTCCCCGCAATCATAACCTCCCACAGAACCCTCTTCACCGTCCTCTGGATCGCCGCCTTCGCCTCCGTCTTCATCTGGCAGAGGAACGTTGTTGTCGGAGGCTTCTTCCTCTTCGGTCGGACCCTCCCGCCGCGCCCGATTCCCAAGCTGAGGCCGGTGGCTTTCAACTTGACGGATTTCGGGGGTGTCGGCGACGGTGTCACCCTCAACACTGAGGCATTTGAGAGGGCCGTTTCTGCGATTTCCAAGTTGGGGAAGAAAGGTGGTGGCCAGCTCAATGTGCCTCCCGGTCGCTGGCTTACTGCGCCCTTCAATCTCACCAGCCATATGACACTTTTTGTAGCTCAAGATGCTGTTATTCTTGGACTTGATGATGAGAAGTATTGGCCACTGATGCCACCATTGCCATCGTATGGGTATGGGAGGGAGCATCCTGGACCACGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATATTGTGATAACAGGGCATAACGGTACCATAAATGGACAGGGACAAACCTGGTGGAAAAAGTATCGTCAAAAACGTCTCAACCACACAAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTCATTGCTGATATTACTTTACGCGACTCTCCTTTTTGGACACTTCATCCATATGACTGCAAAAATATCACTATAAGAAATGTTACAATATTGGCTCCTGTAACTGAAGCTCCAAATACTGATGGCATAGATCCTGACTCTTGTGAGGACATGTTGATAGAGGACTGTTACATAAGTACAGGAGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAGTATGGAATTGCTTATGGAAGGCCATCCATGAATATAATGATCCGGAATCTAGTTGTTCGCTCCGTGGTCAGTGCTGGCGTTTCAATAGGCAGTGAGATGTCTGGTGGGGTGTCCAATGTGACTGTGGAGAATCTTCTTGTATGGGGTTCTAGGCGTGCCGTGAGGATTAAAACGGCCCCTGGGCGAGGCGGATTTGTTCGCCATATTACTTACCGGAATCTAACATTTGATAACGTCCGTGTTGGAATAGTAATTAAGACAGATTACAACGAGCACCCTGATGATGGATATGACCCTAGTGCACTTCCTGTACTCAGAGACATAAGTTTCACCACCGTCCATGGCCAGGGTGTTCGTGTGCCAGTACGAATTCATGGCAGCGAAGAGATCCCAGTGAGAAATGTGACGTTTCGGGACATGTCAGTTGGCCTCACTTACAAGAAGAAACATATCTTTCAGTGTGCCTTTGTCCAAGGGCGCGTAATAGGGACCATCTTTCCTGCTCCCTGTGAGAACCTTGATCGGTACAATGAGCATGGACAGCTAGTTAAGCATTCTGCTTCCCAGAATGTAACAGACATAGATTATGATTTTTGA 1485 0.4822 MMVDTSTLGRFHHQRLEFKRCLPAIITSHRTLFTVLWIAAFASVFIWQRNVVVGGFFLFGRTLPPRPIPKLRPVAFNLTDFGGVGDGVTLNTEAFERAVSAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFVAQDAVILGLDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLKDIVITGHNGTINGQGQTWWKKYRQKRLNHTRGPLVQIMWSSDIVIADITLRDSPFWTLHPYDCKNITIRNVTILAPVTEAPNTDGIDPDSCEDMLIEDCYISTGDDAIAIKSGWDQYGIAYGRPSMNIMIRNLVVRSVVSAGVSIGSEMSGGVSNVTVENLLVWGSRRAVRIKTAPGRGGFVRHITYRNLTFDNVRVGIVIKTDYNEHPDDGYDPSALPVLRDISFTTVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGLTYKKKHIFQCAFVQGRVIGTIFPAPCENLDRYNEHGQLVKHSASQNVTDIDYDF 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g02630 494 PANTHER PECTIN LYASE-RELATED 70 482 - -
Arst1g02630 494 Pfam Glycosyl hydrolases family 28 171 453 IPR000743 GO:0004650|GO:0005975
Arst1g02630 494 SMART pbh1 423 444 IPR006626 -
Arst1g02630 494 SMART pbh1 243 270 IPR006626 -
Arst1g02630 494 SMART pbh1 362 383 IPR006626 -
Arst1g02630 494 SMART pbh1 305 327 IPR006626 -
Arst1g02630 494 SMART pbh1 333 354 IPR006626 -
Arst1g02630 494 SMART pbh1 271 292 IPR006626 -
Arst1g02630 494 Gene3D - 64 456 IPR012334 -
Arst1g02630 494 SUPERFAMILY Pectin lyase-like 68 467 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g02630 Arst-Chr1 88191153 88195564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g02630 10 493 Glycoside Hydrolase AT1G19170 77.778 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g02630 - - rcu:8259080 916.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g02630 1 88191153 88195564 Arst1g02630 1 88191153 88195564 ECH
Arst1g02630 1 88191153 88195564 Arst3g03062 3 50187358 50192000 PCT