Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst1g00143 ATGTCTGCACCTCTTTCTCCCCCGGCAGTCTTAGAAAAGACTGACCGGGTGGGTTCGTTGAAAAAGAAACTGAGAAATTCTTTCAAGAGGAAGGGGAGGCGAAGTAGTAGCAAGGTTATGTCCCTTGAAATAGAGGATTTTCGTGATGCTGGTGAGGCTAAAATTGTTGATGAGTTTCGCCAAGCTCTCATTTTGGATGAGCTTCTCCCTTCCAAGCACGATGACTATCACATGTTGCTCAGGTTCCTGAAGGCTAGGAAATTTGACTTAGAGAAATCAAAGCAAATGTGGGCAGACATGCTTAAGTGGAGGAAGGAATTCGGTGCTGACACAATCGTTGAGGACTTTGAATTCAAGGAAATCGATGAAGTGTTGAAATATTATCCTCATGGACACCATGGTGTAGACAAAGAAGGACGACCAGTGTATATCGAGAGAATAGGGCAAGTAGATGTCACCAAGCTTTTGCAAGTCACAACCATGGATCGTTACATCAAATACCATGTCAAGGAGTTTGAGAAAACCTTTGATATCAAGTTTGCAGCTTGTTCCATTGCTGCAAAGAAACACATTGATCAAAGTACAACCATCCTTGATGTGCAGGGAGTGGGGCTTAAGAACTTCAGCAAACATGCCAGAGAGCTCATCACTGCCCTTCAGAAGATTGATGGCGACAACTATCCTGAAACCTTGAGCCAAATGTACATCATCAATGCTGGTTCTGGATTCAGAATGTTATGGAGCACTGTCAAATCCTTCCTTGACCCAAAAACCACATCTAAGATCCATGTACTTGGCAACAAGTATCAAAGCAAATTGCTAGAAGTGATTGATGCTAGTGAGTTACCAGAGTTTTTAGGAGGTACTTGTACCTGTGCTGATCATGGAGGCTGCATGCATTCTGATAAGGGTCCATGGAAGGATCCAGATATAATGATGATGGTTCAGAATGGGTTCCATAAAAGATCAAACCATAAAATTGAGACAATTCCAGAGAGCAAAAATGAGGAACCTGAGACTCCAAAGCTTGGGGGGGCTGCCACCTCACAAGTGTCTACCATTTCAGCTGAGGTGTGTACTCCTAAAAAGGTCTCTACTCCTAAGAAAGCTTACAATAACTACGGTGCCTTTGTCCCTGCAACTAACAAATCTGCTCCCTGGAAAAAAGTAGAAGAGAATAACAAGTTTGCAATCACAAAAGCACAAGTAGACACATTCAGTAGTATGATTGACTCCTGCAAGATTCACGAAAGGGTGAATTCACAGATTTTCACTGGTTTGATGACGTTCCTGATGGGCATTGTGACTATGGTTAGGATGACAAGGAACATGCCCAAGAAGCTCACCGATGCCAACTTCTACTCCAACACCACCATTTCTGTTCAGGAGTTCATGACTGTCATGAAGCGCATGGCTGAGCTCGAAGAGAAGATGGGAAATCTCAACAATACCCCCTTCGTTATGCCTCCTGACAAGGAGGAGATGCTCAACATTGCTGTCAGCCGTGCCGATGCTTTGGAGAGGGAACTCATGGCAACCAGGAAGGCTTTGGAGGATTCACTTGCTCGTCAACAAGAAATGACTGCTTATATCGAGAAAAAGAAGAAAAAGAAGAAGAAGATGGTACGTGCACTACTGTGCACTACTGCCTTATAG 1656 0.4372 MSAPLSPPAVLEKTDRVGSLKKKLRNSFKRKGRRSSSKVMSLEIEDFRDAGEAKIVDEFRQALILDELLPSKHDDYHMLLRFLKARKFDLEKSKQMWADMLKWRKEFGADTIVEDFEFKEIDEVLKYYPHGHHGVDKEGRPVYIERIGQVDVTKLLQVTTMDRYIKYHVKEFEKTFDIKFAACSIAAKKHIDQSTTILDVQGVGLKNFSKHARELITALQKIDGDNYPETLSQMYIINAGSGFRMLWSTVKSFLDPKTTSKIHVLGNKYQSKLLEVIDASELPEFLGGTCTCADHGGCMHSDKGPWKDPDIMMMVQNGFHKRSNHKIETIPESKNEEPETPKLGGAATSQVSTISAEVCTPKKVSTPKKAYNNYGAFVPATNKSAPWKKVEENNKFAITKAQVDTFSSMIDSCKIHERVNSQIFTGLMTFLMGIVTMVRMTRNMPKKLTDANFYSNTTISVQEFMTVMKRMAELEEKMGNLNNTPFVMPPDKEEMLNIAVSRADALERELMATRKALEDSLARQQEMTAYIEKKKKKKKKMVRALLCTTAL 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst1g00143 551 SUPERFAMILY CRAL/TRIO N-terminal domain 50 116 IPR036273 -
Arst1g00143 551 Gene3D - 35 107 - -
Arst1g00143 551 Coils Coil 503 523 - -
Arst1g00143 551 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 120 294 IPR001251 -
Arst1g00143 551 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 16 535 - -
Arst1g00143 551 SUPERFAMILY CRAL/TRIO domain 120 316 IPR036865 -
Arst1g00143 551 SMART sec14_4 120 291 IPR001251 -
Arst1g00143 551 FunFam SEC14 cytosolic factor 108 319 - -
Arst1g00143 551 SMART CRAL_TRIO_N_2 75 100 IPR011074 -
Arst1g00143 551 CDD SEC14 121 289 IPR001251 -
Arst1g00143 551 PRINTS Cellular retinaldehyde-binding protein signature 280 289 - -
Arst1g00143 551 PRINTS Cellular retinaldehyde-binding protein signature 247 266 - -
Arst1g00143 551 PRINTS Cellular retinaldehyde-binding protein signature 78 100 - -
Arst1g00143 551 Pfam CRAL/TRIO domain 126 288 IPR001251 -
Arst1g00143 551 Coils Coil 464 484 - -
Arst1g00143 551 Pfam CRAL/TRIO, N-terminal domain 72 99 IPR011074 -
Arst1g00143 551 Gene3D - 108 318 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst1g00143 Arst-Chr1 1238145 1244273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst1g00143 56 285 Acyl Lipid Metabolism Gene Families AT5G47730 28.033 5.50e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst1g00143 K26544 - gmx:100785716 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst1g00143 1 1238145 1244273 Arst1g00143 1 1238145 1244273 ECH
Arst7g02296 7 53794187 53798437 Arst1g00143 1 1238145 1244273 ECH