Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g01272 ATGGCGGATCAATTATCGAAGGCAGAAGAATACGAGAAGAAAGCAGAGAAGAAGCTGAATGGTTGGGGCTTGTTTGGCTCCAAATATGAGGATGCTGCTGATCTCTTCGATAAAGCTGCCAATTCCTTCAAGCTCGCTAAATCATGGGACAAAGCGGGAGCAACATACCTCAGGTTGGCAAGTTGCCATTTGAAGTTGGAAAGTAAACATGAAGCTGCCCAAGCCTATGTCGATGCTGCTCATTGCTATAAAAAGACTAATATAAATGAGGCTGTAAATTGCCTGGACCATGCTGTGAATCTATTCTGTGATATTGGAAGACTCTCCATGGCTGCTAGATATTTGAAGGAAATTGCTGAATTGTACGAGTCTCAACAGAATATTGAGCAGGCTGTTGTTTACTATGAAAAATCAGCTGATTTTTTCCAAAATGAAGAAGTTACAACTAGTGCAAACCAGTGCAAGCAAAAGGTTGCTCAATATGCTGCCCAGCTAGAACAATATCAAAAATCAATTGACATTTATGAAGCCATAGCTCGCCAGTCTCTCAACAATAACTTGCTGAAGTATGGAGTTAAAGGACATCTTCTTAATGCTGGTATTTGCGAACTCTGTAAAGGGGATCTCGTTGCTATAAACAATGCACTAGAGAGATATCAGGAGCTGGATCCAACATTTTCAGGAACACGAGAATATAGATTTTTGACGGATTTGGCTGCTTTGTCATTACACTTATATTTTTCTGCAATTGAAGAAGAAGATGTTGGACATTTTACTACCATTGTCAAGGAATTTGATAGCATGACCCCTCTGGATTCTTGGAAGACAACACTTCTTTTGAGGGTAAAGGAAAAGCTGAAGGCCAAAGAACTTGAGGAGGACGATCTTACTTAA 894 0.4016 MADQLSKAEEYEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGATYLRLASCHLKLESKHEAAQAYVDAAHCYKKTNINEAVNCLDHAVNLFCDIGRLSMAARYLKEIAELYESQQNIEQAVVYYEKSADFFQNEEVTTSANQCKQKVAQYAAQLEQYQKSIDIYEAIARQSLNNNLLKYGVKGHLLNAGICELCKGDLVAINNALERYQELDPTFSGTREYRFLTDLAALSLHLYFSAIEEEDVGHFTTIVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g01272 297 CDD SNAP 19 286 IPR000744 GO:0006886
Arst10g01272 297 SMART tpr_5 112 145 IPR019734 GO:0005515
Arst10g01272 297 SMART tpr_5 53 86 IPR019734 GO:0005515
Arst10g01272 297 SUPERFAMILY TPR-like 6 288 IPR011990 GO:0005515
Arst10g01272 297 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 4 287 IPR000744 GO:0006886
Arst10g01272 297 Gene3D Tetratricopeptide repeat domain 4 296 IPR011990 GO:0005515
Arst10g01272 297 Pfam Soluble NSF attachment protein, SNAP 6 286 - -
Arst10g01272 297 FunFam Alpha-soluble NSF attachment protein-like 6 293 - -
Arst10g01272 297 Coils Coil 151 178 - -
Arst10g01272 297 PRINTS NSF attachment protein signature 119 136 IPR000744 GO:0006886
Arst10g01272 297 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Arst10g01272 297 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Arst10g01272 297 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Arst10g01272 297 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Arst10g01272 297 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g01272 Arst-Chr10 17133818 17138426 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g01272 K15296 - gmx:100814639 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g01272 10 17133818 17138426 Arst7g01053 7 8603683 8611585 ECH
Arst10g01272 10 17133818 17138426 Arst10g01272 10 17133818 17138426 ECH
Arst10g01272 10 17133818 17138426 Arst7g01053 7 8603683 8611585 PCT