Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g00408 ATGCAGCGTTTGTCAGCAACGTTGTACCGGAAGGTTGCTCGTCCGGCGTGTGACGTGTTCATCAACCACCGTGGGATCGACACGAAGCGAAACATCGCCGGGCTGTTGTACGACAGCCTCACGAGGAATGGTGTAAGATCTTTCTTGGACAGCAAGAATATGAAGCCTGGGGATAGACTCTTTGATCACATTGATAGGGCTATTGTTGGAAGCAAGGTTGGTGTTGCCGTCTTCTCTCCTCGCTATTGCGACTCCTATTTCTGTCTCCATGAGCTCGCTCTGCTCATGGAGTCCAGAAAGAGGGTCGTTCCCATCTTTTTCGACGTCAAACCTTCGAATCTTCGTGTTAAGGATAATGGAACTTGTCCTCCTAACGAGCTTCGAAGGTTTGACTTGGCTCTCCAGGAAGCTAAGAACATTGTGGGTTTAACCTTTGATTCTTCTAAAGGGGACTGGTCGGAGTTGTTAAGGGATGCTTCGGACGCAGTGATGGTGAACTTGATGGAGGTAGAGGAAGAAAGAAAGCGCATGAAGACGAGGGTGTAA 546 0.4908 MQRLSATLYRKVARPACDVFINHRGIDTKRNIAGLLYDSLTRNGVRSFLDSKNMKPGDRLFDHIDRAIVGSKVGVAVFSPRYCDSYFCLHELALLMESRKRVVPIFFDVKPSNLRVKDNGTCPPNELRRFDLALQEAKNIVGLTFDSSKGDWSELLRDASDAVMVNLMEVEEERKRMKTRV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g00408 181 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 142 IPR035897 -
Arst10g00408 181 Gene3D - 12 171 IPR035897 -
Arst10g00408 181 Pfam TIR domain 19 114 IPR000157 GO:0007165
Arst10g00408 181 PANTHER COP1-INTERACTING PROTEIN-RELATED 13 178 - -
Arst10g00408 181 ProSiteProfiles TIR domain profile. 15 163 IPR000157 GO:0007165
Arst10g00408 181 SMART till_3 16 162 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g00408 Arst-Chr10 3320649 3321309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g00408 12 146 Miscellaneous Gene Families AT1G57670 30.000 1.99e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g00408 - - gmx:100798207 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g00408 10 3320649 3321309 Arst10g00408 10 3320649 3321309 ECH
Arst3g04408 3 119219533 119220296 Arst10g00408 10 3320649 3321309 PCT