Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3148 ATGGATCCCAACCCAGGAACCTTCCCCATTCTCTCCTACGTCATGTCCCGTATCCCTTCCTTCGGTCCCAGAACTCCCACCGCCACCGCCACCGCATCCCATTCTCAATTCGACATCGAACAACCGCAACCCTCGGACCCTTCTTCTTCAATCGTAGGCCAAATGCCGCATCTGGCGGACCCTAAAATGTTGGCGTCCATGACCCGGGCCATCTCCGATGTCGCCCAGGCCCGATCCGTTCTCAAGCTGATCGGAACCCGGCCCACCCACGAGGACGTGGACGATGCGAAGGCCAAGCTGGTGGACCTAGAAGCCCATCTGTCCCGTCAACTGGAGGAGATCGTGGGCCTCCCCAGGCCCCCCGAGATCGACATCCCCCAGTGGCGGGCCCACCTAGCAGACAGAGAGAAGCAGTGCAGGGATGCCTCGGAGAAAGAGAAACGCCTTCTCAAGTCGCTGATTCAGCTGGACGAGATGCACGACTCTTACGAGAAACTCCTCAAAGACGCGGAGAAGCGCTTGGTGAAGATTTACGAGGACGAGGGTGAAAACGACAACGACAATGTTGGTAACGAAGTGAACGAACAAGTGGAAGGAATACTGGAAGCAGCCACTGGGAATGGGGTGGAGCGAGTGAATCTTTCAGGGAAACGCCTGAAGATTCTGCCTGAGGCATTTGGCCGCATTCCTGCATTGGTCGTGCTCGATGTCTCCACCAATCAACTCTCGGTCATTCCCGACTCTATATCTGGATTGCAAAATCTTGAAGACCTTAATATCTCTTCCAATCAATTGGAGTCACTTCCAGATTCAATTGGCTTGTTGCAGAAGTTGAAATTCCTCAATGTCTCTGGAAACAAGCTCACTGCCCTTCCCGATTCCATCAGTCAGTGCAGGTCATTGGTGGAGCTAAATGCAAGCTTTAACGGTCTCTCATATTTGCCAACAAACATTGGATTTGAATTGGGGAATTTACAGAAGCTCATGATTCAGTTGAACAAGATTCGATCTCTTCCCTCATCTATTTGTGAGATGAAATCTTTGCGCTATCTGGATGCTCACTTTAATGAGCTGCATGGGCTTCCTATTGCAATTGGGAAATTGACTAGTCTTGAAGTTATCAACTTGAGCAGTAACTTCAGTGACCTTCAAGAACTTCCGGAGACGTTTGGTGATCTGATTAGCCTAAGGGAATTGGATCTCAGCAACAACCAAATTCATGCGCTTCCTGATACATTTGGTCGCCTTCATAATTTGACCAAGCTAAACTTGGAGCAAAATCCTCTTGAGGTGCCACCTGTGGAGATTGTAAATCAAGGGGTCCAAGCCATAAAGAGTTTCATGGCCCAGAGGTGGATTGATATATTGGCAGAGGAAGAAAGGAAAAGCACTCATGAATTGCAAGAACAAGGAGAAAATGGGTGGTTAACTAGAAGCACCTCTTGGTTGAAGAACGTTTCTGGAAATGTTACTGAGTATATTGGAACGACCATGATGTCCCCCAGAAGTCCCAAAGATGCCTATCTCGATCAGCAGCTATGA 1542 0.4929 MDPNPGTFPILSYVMSRIPSFGPRTPTATATASHSQFDIEQPQPSDPSSSIVGQMPHLADPKMLASMTRAISDVAQARSVLKLIGTRPTHEDVDDAKAKLVDLEAHLSRQLEEIVGLPRPPEIDIPQWRAHLADREKQCRDASEKEKRLLKSLIQLDEMHDSYEKLLKDAEKRLVKIYEDEGENDNDNVGNEVNEQVEGILEAATGNGVERVNLSGKRLKILPEAFGRIPALVVLDVSTNQLSVIPDSISGLQNLEDLNISSNQLESLPDSIGLLQKLKFLNVSGNKLTALPDSISQCRSLVELNASFNGLSYLPTNIGFELGNLQKLMIQLNKIRSLPSSICEMKSLRYLDAHFNELHGLPIAIGKLTSLEVINLSSNFSDLQELPETFGDLISLRELDLSNNQIHALPDTFGRLHNLTKLNLEQNPLEVPPVEIVNQGVQAIKSFMAQRWIDILAEEERKSTHELQEQGENGWLTRSTSWLKNVSGNVTEYIGTTMMSPRSPKDAYLDQQL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3148 513 Coils Coil 153 180 - -
Apr9g3148 513 Coils Coil 93 113 - -
Apr9g3148 513 ProSiteProfiles Leucine-rich repeat profile. 277 298 IPR001611 GO:0005515
Apr9g3148 513 ProSiteProfiles Leucine-rich repeat profile. 254 275 IPR001611 GO:0005515
Apr9g3148 513 MobiDBLite consensus disorder prediction 23 54 - -
Apr9g3148 513 SUPERFAMILY L domain-like 197 434 - -
Apr9g3148 513 SMART LRR_bac_2 322 341 - -
Apr9g3148 513 SMART LRR_bac_2 345 364 - -
Apr9g3148 513 SMART LRR_bac_2 275 294 - -
Apr9g3148 513 SMART LRR_bac_2 252 271 - -
Apr9g3148 513 SMART LRR_bac_2 298 317 - -
Apr9g3148 513 SMART LRR_bac_2 229 248 - -
Apr9g3148 513 SMART LRR_bac_2 393 412 - -
Apr9g3148 513 SMART LRR_bac_2 368 389 - -
Apr9g3148 513 MobiDBLite consensus disorder prediction 23 52 - -
Apr9g3148 513 SMART LRR_typ_2 275 298 IPR003591 -
Apr9g3148 513 SMART LRR_typ_2 252 274 IPR003591 -
Apr9g3148 513 SMART LRR_typ_2 322 345 IPR003591 -
Apr9g3148 513 SMART LRR_typ_2 393 415 IPR003591 -
Apr9g3148 513 SMART LRR_typ_2 299 321 IPR003591 -
Apr9g3148 513 SMART LRR_typ_2 416 439 IPR003591 -
Apr9g3148 513 SMART LRR_typ_2 229 251 IPR003591 -
Apr9g3148 513 SMART LRR_typ_2 368 392 IPR003591 -
Apr9g3148 513 PANTHER LEUCINE-RICH REPEAT-CONTAINING 3 498 - -
Apr9g3148 513 Gene3D Ribonuclease Inhibitor 190 453 IPR032675 -
Apr9g3148 513 Pfam Leucine rich repeat 254 311 IPR001611 GO:0005515
Apr9g3148 513 Pfam Leucine rich repeat 370 429 IPR001611 GO:0005515
Apr9g3148 513 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 3 498 - -
Apr9g3148 513 ProSiteProfiles Leucine-rich repeat profile. 395 416 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3148 Apr-Chr9 38289770 38291538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3148 212 468 Receptor kinase-like Gene Family AT5G56040 29.299 2.92e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3148 - - gmx:100782818 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3148 9 38289770 38291538 Apr9g3148 9 38289770 38291538 ECH
Apr9g3148 9 38289770 38291538 Apr1g0768 1 9245817 9249246 PCT