Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0768 ATGGATCCAAACCCGGGAACCTTTCCGCTTCTCTCCTACGTCATGTCTCGTCTCCCTTCCCTCACGCCCAGAACCGCCACAACTCCTTCCGATTCCGACCAATTCGATATCGAACAGCCTCGCGCTCCGGAAATCGTGGGACAAATGCCGCACCTCGCTGACCCGGAGTTGGTAGCCTCCATGGCCCGGGCCATATCCGACGTGGAGCAGGCCCGGTCGGTGCTGAAGCTGATTGGGGAGAGGCCCACTCACGAAGAAGTGGACCACGCTCGAGCCCAGTTGGCGGAGATGGAAGCCCAGCTGTCGAGACAGCTGGAGGAGATCGTGATGCAGGCGAGGCCCGCGGAGATGGAGATCCACGTGTGGCGGGCCCAGCAGGCCCAGAAGGAGAGGGAATGCAGGGAGTGGGCCGAGAAGGAGAAGCAAATTTGGAAATCGGTGTTGCAGCTGGACGAGATGCACGAGGCGTACGAGAAGCTTCTGAAGGACGCTGAGAAGCGCTTGGTGAGAATGTACGAGTCTGCTGAAGATGGAGATGGTGATGGAGAAAAAACCGCTTGTGAGGAAGTGAACGAAGAGGTTGTGGGAATACTGCAAGAGGCCTATGGCAAAGGAATGGAGCGAGTGAATCTTTCTGGTCGCCAATTGAAGCTCTTGCCTGATGCTTTTGGTCGGATTCCTGGCTTGCTCGTGCTTGATCTTTCAAGCAATCAGTTTTCGGCAATTCCTGACTCAATAGCTGGATTGCAAAACCTCGAGGAGCTTAATCTCACTTCAAATCTTTTGGAATCACTGCCAGATTCAATTGGATTGTTACAAAAATTGAAATTGCTCAATGTCTCTGGAAACAAGCTGACTGCCCTTCCTGATCCCATCTGCCAATGCAGGTCATTGGTGGAGTTGGATGTAAGCTTTAACAATCTATCATATTTGCCAACAAACATTGGGTATGAATTACCGAACTTAAAGAAACTCATGATTCAGTTGAACAAGATTCGATCTCTTCCCTCATCTATTTGTGAGTTGAAGTCCTTGCGCTATTTGGATGCTCACTTTAATGAGCTACATGGGCTTCCAATTGCAATTGGGAGACTGACTAATCTCGAAGTTCTCAATCTGAGCAGTAACTTCAGTGACCTTAAGGAACTTCCTGAGACATTTGGTGATTTGACTAACCTCAGAGAATTGGATCTCAGCAATAATCAAATTCATGCGCTTCCTGATACATTTGGTCGCCTTGATAATTTGACCAAGCTAAACTTGGAGCAGAATCCTCTTGAATTGCCACCAATGGAGATTGTAAATCAAGGGGTGGAAGCCATAAAGAATTTTATGGCCAAGAGGTGGATTGATATATTGATGGAGGAAGAAAGGAAAAGCAATCAAGAAATGCAAGAACAAGAACAAGAACAGGGTGGTTGGTTAACACGAAGCACCTCCTGGTTGAAAAATATGTCTGGAAATGTAATTGGTTATCTTGGAACGGCCGTTGGATCTCCTACACCCAAATCTCCCAGAGATGCTTATCTTGATCAGCAGTTATGA 1545 0.4809 MDPNPGTFPLLSYVMSRLPSLTPRTATTPSDSDQFDIEQPRAPEIVGQMPHLADPELVASMARAISDVEQARSVLKLIGERPTHEEVDHARAQLAEMEAQLSRQLEEIVMQARPAEMEIHVWRAQQAQKERECREWAEKEKQIWKSVLQLDEMHEAYEKLLKDAEKRLVRMYESAEDGDGDGEKTACEEVNEEVVGILQEAYGKGMERVNLSGRQLKLLPDAFGRIPGLLVLDLSSNQFSAIPDSIAGLQNLEELNLTSNLLESLPDSIGLLQKLKLLNVSGNKLTALPDPICQCRSLVELDVSFNNLSYLPTNIGYELPNLKKLMIQLNKIRSLPSSICELKSLRYLDAHFNELHGLPIAIGRLTNLEVLNLSSNFSDLKELPETFGDLTNLRELDLSNNQIHALPDTFGRLDNLTKLNLEQNPLELPPMEIVNQGVEAIKNFMAKRWIDILMEEERKSNQEMQEQEQEQGGWLTRSTSWLKNMSGNVIGYLGTAVGSPTPKSPRDAYLDQQL* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0768 514 MobiDBLite consensus disorder prediction 495 514 - -
Apr1g0768 514 ProSiteProfiles Leucine-rich repeat profile. 392 413 IPR001611 GO:0005515
Apr1g0768 514 SMART LRR_typ_2 296 318 IPR003591 -
Apr1g0768 514 SMART LRR_typ_2 249 271 IPR003591 -
Apr1g0768 514 SMART LRR_typ_2 365 389 IPR003591 -
Apr1g0768 514 SMART LRR_typ_2 226 248 IPR003591 -
Apr1g0768 514 SMART LRR_typ_2 390 413 IPR003591 -
Apr1g0768 514 SMART LRR_typ_2 319 342 IPR003591 -
Apr1g0768 514 SMART LRR_typ_2 272 295 IPR003591 -
Apr1g0768 514 ProSiteProfiles Leucine-rich repeat profile. 251 272 IPR001611 GO:0005515
Apr1g0768 514 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 4 497 - -
Apr1g0768 514 Coils Coil 450 470 - -
Apr1g0768 514 Pfam Leucine rich repeat 217 262 IPR001611 GO:0005515
Apr1g0768 514 Pfam Leucine rich repeat 367 426 IPR001611 GO:0005515
Apr1g0768 514 Pfam Leucine rich repeat 296 355 IPR001611 GO:0005515
Apr1g0768 514 SMART LRR_bac_2 390 409 - -
Apr1g0768 514 SMART LRR_bac_2 342 361 - -
Apr1g0768 514 SMART LRR_bac_2 365 386 - -
Apr1g0768 514 SMART LRR_bac_2 249 268 - -
Apr1g0768 514 SMART LRR_bac_2 226 245 - -
Apr1g0768 514 SMART LRR_bac_2 319 338 - -
Apr1g0768 514 SMART LRR_bac_2 272 291 - -
Apr1g0768 514 SMART LRR_bac_2 295 314 - -
Apr1g0768 514 Coils Coil 87 107 - -
Apr1g0768 514 Coils Coil 147 174 - -
Apr1g0768 514 Gene3D Ribonuclease Inhibitor 91 328 IPR032675 -
Apr1g0768 514 PRINTS Leucine-rich repeat signature 229 242 - -
Apr1g0768 514 PRINTS Leucine-rich repeat signature 390 403 - -
Apr1g0768 514 PANTHER LEUCINE-RICH REPEAT-CONTAINING 4 497 - -
Apr1g0768 514 SUPERFAMILY L domain-like 205 431 - -
Apr1g0768 514 Gene3D Ribonuclease Inhibitor 330 446 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0768 Apr-Chr1 9245817 9249246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0768 206 431 Receptor kinase-like Gene Family AT5G56040 30.742 1.28e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0768 - - gmx:100803823 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0768 1 9245817 9249246 Apr1g0768 1 9245817 9249246 ECH
Apr9g3148 9 38289770 38291538 Apr1g0768 1 9245817 9249246 PCT