Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3136 ATGCGAATGGGTATGGAGGAGGAGAGTAGCATTACCATTAGCAATACCAACATAGAAGGTGGTGCTTCGTTACCATCATCAGGTTCAGATGCTAAGAAGCGAACTGTCACATACTTCTACGAACCCACCATCGGCGACTATTACTACGGCCAAGGCCACCCCATGAAACCGCACCGCATCCGCATGGCCCACAACCTCATCGTTCACTACTCCCTCCACCGCCGCATGGAGATTAGCCGCCCCTTCCCCGCCTCTCCCGACGACATTCGCCGCTTCCACTCCGACGAATACGTCGAATTCCTCTCCTCCGTCTCCCCCGAGACCCTCGCCGAAACCACCTTCTCCCGCCAGCTCAAGCGCTTCAACGTCGGCGAGGACTGCCCCGTCTTCGACGGCCTCTTCAATTTCTGCCAGGCCTCCGCCGGTGGCTCCATCGGCGCCGCCGTCAAACTCAACCGCGCCGACGCCGACATCGCCATCAATTGGGCCGGCGGCCTGCACCATGCTAAGAAATCCGAGGCTTCTGGGTTCTGTTACGTCAACGACATTGTCCTCGGTATCCTTGAGCTGCTCAAGGTTCACAGGCGTGTACTGTATGTTGACATTGATGTGCACCATGGTGATGGTGTTGAGGAGGCCTTTTACACTACTGATAGAGTGATGACTGTGTCTTTCCATAAGTTTGGGGACTTTTTCCCAGGCACTGGACACATAAAAGACATTGGGGTGGGCTCAGGAAAGAATTATGCTGTAAATGTTCCATTAAATGACGGAATGGATGATGATAATTTCCGTTGTCTGTTTCGTACCATCATTCAAAAAGTCATGGAGGTTTATCAACCTGAAGCAGTTGTTCTTCAATGTGGAGCTGATTCATTGTCTGGTGACAGGTTGGGGTGCTTCAACTTGTCTGTGAGAGGTCATGCAGATTGCCTTCGTTTCCTTAGATCTTTCAATGTTCCTTTGATGGTCTTGGGTGGAGGAGGATATACAATTCGGAATGTTGCTCGTTGTTGGTGTTACGAGACAGCTGTGGCAGTAGGAGTGGAGCCTGATAATAAGTTGCCTTATAATGAATATTATGAGTATTTTGGCCCAGATTATACTCTCTATGTTGATCCAAGCAACATGGAGAACCTAAACACACCCAAGGATATGGAAAAAATAAGGAACACACTACTAGAACAGATTTCCCGACTTCCCCATGCTCCCAGTGCACCTTTTCAGACAACACCACCTATCTTACAAGGTCCAGAAGAGGCAGAAGAGGATATGGATAAAAGACCAAAACGTCGCAAATGGAATGGTGAAGATTATGATTCTGATCCCGATGAAGATGAAAAGGTTAATTCCAAGTGCTCAAACTTCACTGCTCATATGAGAAATGTTACTCTCTGTGGTGCATGGATATTGCAGATGACATGGAAGAAGAGAAGCCAGAAGTGCATCCATCATCTTGCTGCTGATAGAATAGAGCAAGTTCTTGCACAGCATGTTTGTATTGTAATATCTTCCGTTGATGGGGGAGGTCATTACTTCGAGTTATATAAATAG 1554 0.4807 MRMGMEEESSITISNTNIEGGASLPSSGSDAKKRTVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEISRPFPASPDDIRRFHSDEYVEFLSSVSPETLAETTFSRQLKRFNVGEDCPVFDGLFNFCQASAGGSIGAAVKLNRADADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGVGSGKNYAVNVPLNDGMDDDNFRCLFRTIIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVRGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLYVDPSNMENLNTPKDMEKIRNTLLEQISRLPHAPSAPFQTTPPILQGPEEAEEDMDKRPKRRKWNGEDYDSDPDEDEKVNSKCSNFTAHMRNVTLCGAWILQMTWKKRSQKCIHHLAADRIEQVLAQHVCIVISSVDGGGHYFELYK* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3136 517 Gene3D Histone deacetylase domain 32 407 IPR037138 -
Apr9g3136 517 MobiDBLite consensus disorder prediction 1 30 - -
Apr9g3136 517 PRINTS Histone deacetylase signature 55 72 IPR003084 GO:0004407|GO:0016575
Apr9g3136 517 PRINTS Histone deacetylase signature 88 106 IPR003084 GO:0004407|GO:0016575
Apr9g3136 517 PRINTS Histone deacetylase signature 121 138 IPR003084 GO:0004407|GO:0016575
Apr9g3136 517 PRINTS Histone deacetylase signature 142 162 IPR003084 GO:0004407|GO:0016575
Apr9g3136 517 PRINTS Histone deacetylase signature 183 199 IPR003084 GO:0004407|GO:0016575
Apr9g3136 517 PRINTS Histone deacetylase signature 242 255 IPR003084 GO:0004407|GO:0016575
Apr9g3136 517 PRINTS Histone deacetylase signature 259 277 IPR003084 GO:0004407|GO:0016575
Apr9g3136 517 Pfam Histone deacetylase domain 53 344 IPR023801 -
Apr9g3136 517 PANTHER HISTONE DEACETYLASE 6 20 450 - -
Apr9g3136 517 CDD HDAC_classI 39 346 - -
Apr9g3136 517 PRINTS Histone deacetylase superfamily signature 164 187 IPR000286 -
Apr9g3136 517 PRINTS Histone deacetylase superfamily signature 196 211 IPR000286 -
Apr9g3136 517 PRINTS Histone deacetylase superfamily signature 281 291 IPR000286 -
Apr9g3136 517 MobiDBLite consensus disorder prediction 420 450 - -
Apr9g3136 517 SUPERFAMILY Arginase/deacetylase 35 399 IPR023696 -
Apr9g3136 517 MobiDBLite consensus disorder prediction 8 30 - -
Apr9g3136 517 PIRSF HDAC_I_euk 15 466 IPR003084 GO:0004407|GO:0016575
Apr9g3136 517 PANTHER HISTONE DEACETYLASE 20 450 - -
Apr9g3136 517 MobiDBLite consensus disorder prediction 401 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3136 Apr-Chr9 38194689 38198453 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3136 K06067 - gmx:100807923 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3136 9 38194689 38198453 Apr9g3136 9 38194689 38198453 ECH
Apr9g3136 9 38194689 38198453 Apr1g0779 1 9521532 9530219 PCT