LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr1g0779	ATGGGTAGCGGAGAGAGAGCAGAGGCAGAGAGTGGGGCGTCGCTACCGTCAGTGGGAACAGACGCAAAGAAGCGTAGAGTTACGTATTTCTACGAACCCAGCATCGGTGACTACTACTACGGTCAAGGTCACCCAATGAAACCCCATCGCATTCGCATGGCCCACAACCTCATCGTTCACTACGCGCTTCACCGTCGCATGCAGATCAACCGCCCCTTCCCCGCTGAGGTCGCTGACATCCGCCGCTTCCACTCCGACGAGTACGTGGAATTCCTCTCCTCCGTCTCGCCGGAGATCCTCTCCGACAATTCCCACTCTCACTACCGCCAACTCAAGCGCTTCAACGTCGGCGAGGACTGCCCCGTCTTCGACGGCCTCTTCGACTTCTGCAGCGCCTCCGCCGGCGGCTCCATCGGCGCCGCCGTCCGTCTCAACCGTGCTGATGCCGATATCGCAATCAATTGGGCCGGCGGTTTGCACCACGCCAAGAAGTCCGAAGCCTCTGGGTTCTGCTACGTCAACGACATCGTCCTCGGCATTCTCGAACTTCTCAAAGTTCATAGGCGTGTGTTGTATGTTGATATTGATGTTCACCATGGAGATGGAGTTGAGGAGGCATTTTACACTACTGATAGAGTGATGACAGTGTCATTTCATAAGTTTGGGGATTTTTTCCCCGGAACCGGGCACATTAGAGACACTGGGCTGGGTACTGGAAAGAATTATGCACTGAATGTCCCGCTCAATGATGGAATGGATGATGAAAATTTCCGCAGTCTGTTTCGTCCCATCATTCAAAAAGTCATGGATGTTTATCAACCTGATGCTGTTGTTCTTCAATGTGGAGCTGACTCTTTGTCTGGTGACAGGCTGGGTTGCTTCAACTTGTCGGTGAAGGGTCATGCTGATTGCCTTCGTTTCATACGATCTTTCAATGTTCCTCTAATGGTCTTGGGTGGGGGAGGATATACAGTTCGGAATGTTGCTCGTTGCTGGTGTTATGAGACAGCAGTGGCAGTTGGAGTGGAGCCTAATAATAAGTTGCCTTACAATGAATATTATGAATATTTTGGCCCAGAATATACCCTTCATGTCGATCCATACAACATGGAAAACCTAAACACACCCAGTGATCTGGAAAGAATTAGGAATACTTTACTAGAACAACTTTCTAGACTTCCCCATGCACCTAGTGCACCTTTTCAAACAACACCATCAACCATACAAGTTCCAGAAGAGGAAGAGGAGGACATGGACATAAGACCACAACGTCGCATATGGAATGGTTTAGATTTTGATTCTGATAATGATGATGACATGACTAGTTCAAGGAACTTGAACTTAACTTCCCAAATGAGGTATGTTGCAGATGAGATGGAAGAAGATAAACCAGGAGTGTATCCGTCATCATAA	1413	0.489	MGSGERAEAESGASLPSVGTDAKKRRVTYFYEPSIGDYYYGQGHPMKPHRIRMAHNLIVHYALHRRMQINRPFPAEVADIRRFHSDEYVEFLSSVSPEILSDNSHSHYRQLKRFNVGEDCPVFDGLFDFCSASAGGSIGAAVRLNRADADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDTGLGTGKNYALNVPLNDGMDDENFRSLFRPIIQKVMDVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFIRSFNVPLMVLGGGGYTVRNVARCWCYETAVAVGVEPNNKLPYNEYYEYFGPEYTLHVDPYNMENLNTPSDLERIRNTLLEQLSRLPHAPSAPFQTTPSTIQVPEEEEEDMDIRPQRRIWNGLDFDSDNDDDMTSSRNLNLTSQMRYVADEMEEDKPGVYPSS*	471

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr1g0779	470	Pfam	Histone deacetylase domain	44	337	IPR023801	-
	Apr1g0779	470	Gene3D	Histone deacetylase domain	16	405	IPR037138	-
	Apr1g0779	470	PRINTS	Histone deacetylase signature	46	63	IPR003084	GO:0004407\|GO:0016575
	Apr1g0779	470	PRINTS	Histone deacetylase signature	79	97	IPR003084	GO:0004407\|GO:0016575
	Apr1g0779	470	PRINTS	Histone deacetylase signature	114	131	IPR003084	GO:0004407\|GO:0016575
	Apr1g0779	470	PRINTS	Histone deacetylase signature	135	155	IPR003084	GO:0004407\|GO:0016575
	Apr1g0779	470	PRINTS	Histone deacetylase signature	176	192	IPR003084	GO:0004407\|GO:0016575
	Apr1g0779	470	PRINTS	Histone deacetylase signature	235	248	IPR003084	GO:0004407\|GO:0016575
	Apr1g0779	470	PRINTS	Histone deacetylase signature	252	270	IPR003084	GO:0004407\|GO:0016575
	Apr1g0779	470	CDD	HDAC_classI	30	339	-	-
	Apr1g0779	470	MobiDBLite	consensus disorder prediction	428	449	-	-
	Apr1g0779	470	PANTHER	HISTONE DEACETYLASE	11	443	-	-
	Apr1g0779	470	SUPERFAMILY	Arginase/deacetylase	25	392	IPR023696	-
	Apr1g0779	470	PANTHER	HISTONE DEACETYLASE 6	11	443	-	-
	Apr1g0779	470	PIRSF	HDAC_I_euk	9	465	IPR003084	GO:0004407\|GO:0016575
	Apr1g0779	470	PRINTS	Histone deacetylase superfamily signature	157	180	IPR000286	-
	Apr1g0779	470	PRINTS	Histone deacetylase superfamily signature	189	204	IPR000286	-
	Apr1g0779	470	PRINTS	Histone deacetylase superfamily signature	274	284	IPR000286	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr1g0779	Apr-Chr1	9521532	9530219	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr1g0779	K06067		-	gmx:100801159	850.892

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr1g0779	1	9521532	9530219	Apr1g0779	1	9521532	9530219	ECH
	Apr9g3136	9	38194689	38198453	Apr1g0779	1	9521532	9530219	PCT