Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3128 ATGAAGGCAACACTACGGTACTTAGCAGGCATTGCTGGCCCAAGTGGTTTTGGCTCAAATTCAACAGCTGAGCAAGTCACTGAGGATTGCTCTTCCTTGTTCCTTTCAAATCTAACCGCTTTAATCACTGGTGGGACTTCTGGTATTGGAGCTGAAACAGCTAGGGTGTTAGCAAAGAGAGGAGTGAGGGTTGTGATTGGTGCCAGGGACTTGAGAAAGGCCAGGGAAGTCAGAGAGAAAATCCAAGAGGAGAGTCCAAATGCTGAGGTTATTCTGTTGGAGATTGATCTTAGCTCTTTTGCTTCTGTACAGAGATTTTGTTCAGAGTTTTTAGCATTAGAATTGCCCCTTAATATTCTCATAAACAATGCAGGAATGTACTCTCAACACTTGGAGTTCTCAGAAGAGAAAATTGAAATGACATTTGCTACAAATTACCTAGGTCATTTCTTGTTAACAAAAATGCTACTAGAGAAACTGATAGATACTGCAATGAAGACTGGCATTCAAGGCAGAATAATAAACATTTCCTCTGTGATTCATAGCTGGGTGAAAAGATCTGGCTTTTGTTTCAACGACATGCTCTGTGGAAAAAATTATAATGGCAGACGCGCATATGCTCAGTCAAAATTGGCCACAATTCTGCATGTGAAGGAAATGGCCAGACAGCTGAAGGACAGGAATGCAAATGTCACGATTAACGCAGTGCATCCAGGCATTGTGAAAACGGGAATTATTAGAGCACACAAGGGCTTAATAACGGATTCCCTGTTTTTCATTGCATCCAAGTTATTGAAAACCATATCACAGGGTGCATCAACGACGTGTTATGTTGCTCTAAGCCCACAAATAGAAGGGGTGAGTGGGAAATACTTTACAGATTGTAACGAGAGTAGCTGCTCAAGTCTTGCAAATGACGAATCCGAAGCTAAAAAGCTATGGAACGACACTCATGCCTTGCTTCACAAACGGCTACGTCAAGCAGCAAGTTGA 993 0.4209 MKATLRYLAGIAGPSGFGSNSTAEQVTEDCSSLFLSNLTALITGGTSGIGAETARVLAKRGVRVVIGARDLRKAREVREKIQEESPNAEVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGMYSQHLEFSEEKIEMTFATNYLGHFLLTKMLLEKLIDTAMKTGIQGRIINISSVIHSWVKRSGFCFNDMLCGKNYNGRRAYAQSKLATILHVKEMARQLKDRNANVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKTISQGASTTCYVALSPQIEGVSGKYFTDCNESSCSSLANDESEAKKLWNDTHALLHKRLRQAAS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3128 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Apr9g3128 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Apr9g3128 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Apr9g3128 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 36 298 IPR036291 -
Apr9g3128 330 PANTHER RETINOL DEHYDROGENASE 4 326 - -
Apr9g3128 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Apr9g3128 330 Pfam short chain dehydrogenase 198 246 IPR002347 -
Apr9g3128 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Apr9g3128 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Apr9g3128 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Apr9g3128 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Apr9g3128 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Apr9g3128 330 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 326 - -
Apr9g3128 330 Gene3D - 28 326 - -
Apr9g3128 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3128 Apr-Chr9 38106903 38109774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3128 17 294 Acyl Lipid Metabolism Gene Families AT3G46170 25.862 6.66e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3128 - K11153 gmx:100819058 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3128 9 38106903 38109774 Apr9g3128 9 38106903 38109774 ECH
Apr9g3128 9 38106903 38109774 Apr1g0787 1 9667256 9671390 PCT