Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0787 ATGAAGCCAACACTAAGATACTTAGCAGGAATTGCAGGCCCAAGTGGTTTTGGCTCAAATTCAACAGCTGAGCAAGTTACTGAAGATTGTTCTTCTTTTCTTCCTTCTGCTCTAACAGCTCTCATCACTGGGGCTAGTTCTGGTATTGGAGCTGAAACAGCTAGGGTGTTAGCAAAGAGAGGAGTGAGAGTTGTGATTGCTGCGAGGGACTTGAAAAAAGCCAAGGAAGTGAGAAAGAACATACAAAAGGAGAGTCCAAACGCAGAGGTTATTTTGTTGGAGATCGATCTTAGCTCTTTTGGTTCTATACAAAGATTTTGTTCCGAGTTCTTAGCTTTAGAACTTCCCCTTAATATCCTCGTAAACAATGCAGGGATATTCTCTCAAAACATGGAGTTCTCTGAAGATAAAATTGAGATGACATTTGCTACAAATTATTTAGGTCACTTTTTGTTAACTGAAATCTTACTAGACAAAATGATAGAAACGGCAGAGAAGACAGGTATTGAAGGAAGAATAATAAACGTTTCTTCTGTGATTCATAGCTGGGTGAAGAGAGATGGTTTTCGTTTCAACGACATACTCAAAGGAAAAAAATATAATGGCACACGCGCTTATGCTCAGTCAAAATTGGCCAATATTTTGCATGCCAAGGAAATAGCCAGACAGCTAAAGGCAAGGAATGCAAGAGTAACTATCAATGCAGTACATCCAGGCATTGTGAAGACGGGAATAATTAGAGCTCATAAGGGCTTAATAACGGATTCCTTATTTTTCATCGCATCGAAGTTACTCAAATCGACATCACAGGGTGCATCAACTACGTGTTATGTTGCTCTGAGCCCAAAAACAGAAGGGGTAAGTGGGAAATACTTTGCAGATTGTAATGAAAGTAACTGCTCAAGCCTAGCAAATGATGAATCGGAAGCGCAAAAGCTATGGAACAACACCCATGCCTTGCTCCACAAACGACTGCGTCAAGCAACACTTTGA 993 0.4038 MKPTLRYLAGIAGPSGFGSNSTAEQVTEDCSSFLPSALTALITGASSGIGAETARVLAKRGVRVVIAARDLKKAKEVRKNIQKESPNAEVILLEIDLSSFGSIQRFCSEFLALELPLNILVNNAGIFSQNMEFSEDKIEMTFATNYLGHFLLTEILLDKMIETAEKTGIEGRIINVSSVIHSWVKRDGFRFNDILKGKKYNGTRAYAQSKLANILHAKEIARQLKARNARVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSTSQGASTTCYVALSPKTEGVSGKYFADCNESNCSSLANDESEAQKLWNNTHALLHKRLRQATL* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0787 330 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 326 - -
Apr1g0787 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Apr1g0787 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Apr1g0787 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Apr1g0787 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Apr1g0787 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Apr1g0787 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 298 IPR036291 -
Apr1g0787 330 Coils Coil 64 84 - -
Apr1g0787 330 Gene3D - 36 326 - -
Apr1g0787 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Apr1g0787 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Apr1g0787 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Apr1g0787 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Apr1g0787 330 PANTHER RETINOL DEHYDROGENASE 4 326 - -
Apr1g0787 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0787 Apr-Chr1 9667256 9671390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0787 41 248 Acyl Lipid Metabolism Gene Families AT3G55290 31.455 7.99e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0787 - - gmx:100801384 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0787 1 9667256 9671390 Apr1g0787 1 9667256 9671390 ECH
Apr9g3128 9 38106903 38109774 Apr1g0787 1 9667256 9671390 PCT