Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3086 ATGGCCAAAGAGACCATTAGTGTTGTTTGCGAGCATCCCAAGAAATGGCAAGTAAAAGATGAATATTTTGATGATGAAAAGGTTGTAATATCAGTCGCTGATAATGGAAGGAAGGAGAGTATTGGAGCAGCTAAAGACGCATCTCCTGCATTTCCCGGGTGGTATACTGATGTATCCTGGCCGGGAGAAGCACACATATATAAAATGAAAAAGATCATATTCCAAGGGAAGTCAGAATTCCAAGAGCTTCTTGTATTTGAGTCATTTGGACATGGCAAGGTTGCAATTCTGGATGGGTATATCCAGCTGACAGAGAATGATGAATTTGCCTACCAAGAGATGCTCACACATCTTGCACTCTGTTCGATTCCAAATCCAAAGAAGGTGCTGCTGGTTGGAGGGGGAGATGGTGGAATTCTTAGGGAAATATCACGTCATTCTTCTGTTGAGCATATTGATATATGTGAAATAGACATAATGGTGATTGATGTTTATAAGAAGTTTTTTCCAGATATAGCAATTGGTTACGAGGATCCCCGAGTGCACGTTCATATCAGGGATGGAATTGCGTTCATCAAAACTGTTGCTGAGGGCACTTACGATGCAATTATATTGGATGCTTTCCAACCAATGGGACCTATAGCAGATGTGCTTGCGGATAACTGCTTCTTAGAATCAGTAGCAAAGGCTCTTCGACCCGGTGGAGTGTTGTCTGCTCCAGCAGACAGCTTGTGGCATAAGAACTTTGTCATTGCAGAAACCATAGCAAATTGCAAGAAGATATTCAAAGGCTCAGTTAACTATGCTTGGACAACAGTGCCTACATATGCAAGTGGAGTGATTGGATTCATGCTTTGCTCCACGGAGGGCCCTCCAGTCAACTTCAAACACTCAACAAATCCATTGAATCCAAAGCAAAATGGGGTTGCAAAGGGACCTCCAAAGTTTTATAACCAAGAGATCCATGCTGCAGCATTTTGCCTACCTTCTTTTGTGGGCAAGGTTATTGATCCATAA 1017 0.4238 MAKETISVVCEHPKKWQVKDEYFDDEKVVISVADNGRKESIGAAKDASPAFPGWYTDVSWPGEAHIYKMKKIIFQGKSEFQELLVFESFGHGKVAILDGYIQLTENDEFAYQEMLTHLALCSIPNPKKVLLVGGGDGGILREISRHSSVEHIDICEIDIMVIDVYKKFFPDIAIGYEDPRVHVHIRDGIAFIKTVAEGTYDAIILDAFQPMGPIADVLADNCFLESVAKALRPGGVLSAPADSLWHKNFVIAETIANCKKIFKGSVNYAWTTVPTYASGVIGFMLCSTEGPPVNFKHSTNPLNPKQNGVAKGPPKFYNQEIHAAAFCLPSFVGKVIDP* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3086 338 PANTHER SPERMIDINE/SPERMINE SYNTHASE 4 335 IPR001045 GO:0003824
Apr9g3086 338 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 54 336 IPR029063 -
Apr9g3086 338 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 129 142 IPR030373 -
Apr9g3086 338 Gene3D Vaccinia Virus protein VP39 105 338 IPR029063 -
Apr9g3086 338 TIGRFAM speE: spermidine synthase 54 331 IPR001045 GO:0003824
Apr9g3086 338 Pfam Spermidine synthase tetramerisation domain 53 105 IPR035246 -
Apr9g3086 338 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 52 288 IPR030374 -
Apr9g3086 338 CDD AdoMet_MTases 150 237 - -
Apr9g3086 338 Pfam Spermine/spermidine synthase domain 108 296 - -
Apr9g3086 338 Hamap Polyamine aminopropyltransferase [speE]. 53 337 IPR001045 GO:0003824
Apr9g3086 338 PANTHER SYNTHASE 1, PUTATIVE-RELATED 4 335 - -
Apr9g3086 338 Gene3D Spermidine synthase, tetramerisation domain 38 104 IPR037163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3086 Apr-Chr9 37649114 37656019 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3086 K00797 - gmx:100788406 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0834 1 10870535 10889987 Apr9g3086 9 37649114 37656019 ECH
Apr9g3086 9 37649114 37656019 Apr9g3086 9 37649114 37656019 ECH