Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0834 ATGGAGGCTGCTTTGCAGACTCTATCATTGGGGAAGCCCCTTCTCTTGCACTTAGGGAGGGTGGAGGATATAGTCCCTTTAGGTAGAAAAATTTATATAACTACAGATGTTATTTTTTATGAATTTGTATTTCCTTTCAAACAAAATGACAACAACAATGACAAATCAAGTTATTTGAATTCTCTCTTTCCAGGATGGTTTTCAGAGTATTCTCCATTATGGCCAGGACAAGCACATTTCTTGAAGGTGGAAAAGATTTATTTTCAAGGAAAATCTAAATACCAAAATATGCTAGTTTTTCAGTCATCAACATATGGTAAGGTTTTTGTCTTGGATGGAGCACTCCAACTTACTGAGAAGGACGAATGTTCTTACCAAGAAATGATGACTCACCTTCCTCTCTGTTCTATCCCAAACCCAAAAAAGGTTTTGCTCATTGGTGGTGGAGATGGTGGCATCCTAAGGGAAATTTCCCGTCACTCATCTGTTGAACAGATCGACATATGTGAAATAGACACAATGCTGATTGATGTCTATAAAGAATTTTTCCCACATGTGGCAGTTGGATACAAGGACTCTCGAGTCAGGCTTCATGTTATAGATGGAGCTATTTTTCTGAACTCTGTCCCAAGAGGCACCTATGATGCAATAATAGTGGATGCCTTCGACCCTATAAGGCCTGATCATGAGCTTTTTGAATCTCAGTTTTTTGAACTGGTTTCAAAAGCTCTTCGTCCAGGAGGAGTCTTGTGCATCCAAGCAGAGAGTATTTGGTTTCGGTCATTGAATATTGAAGAACTCCTCACCAAATGCCGCCAAACATTCAAAGGCTCCACTGATTATGCATGGACAACTGTCCCTGCATATCCAAGTGGGGTCATTGGTTTCTTGCTTTGTTCCACCGAAGGTCCATACGTCGACTTCAGAAGTCCAATTAACCCGATCAATCCCGAAAATTATGGCATATCAAAGCAACCCTTGAAGTTTTACAATTCAGAGGTTCATTCAGCTTCGTTTTGTTTGCCATCTTTTGCCAAAAGAGTGCAAAAGGAATTTGATGGTATAAGGACAGAGACATGA 1080 0.4009 MEAALQTLSLGKPLLLHLGRVEDIVPLGRKIYITTDVIFYEFVFPFKQNDNNNDKSSYLNSLFPGWFSEYSPLWPGQAHFLKVEKIYFQGKSKYQNMLVFQSSTYGKVFVLDGALQLTEKDECSYQEMMTHLPLCSIPNPKKVLLIGGGDGGILREISRHSSVEQIDICEIDTMLIDVYKEFFPHVAVGYKDSRVRLHVIDGAIFLNSVPRGTYDAIIVDAFDPIRPDHELFESQFFELVSKALRPGGVLCIQAESIWFRSLNIEELLTKCRQTFKGSTDYAWTTVPAYPSGVIGFLLCSTEGPYVDFRSPINPINPENYGISKQPLKFYNSEVHSASFCLPSFAKRVQKEFDGIRTET* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0834 359 Hamap Polyamine aminopropyltransferase [speE]. 65 350 IPR001045 GO:0003824
Apr1g0834 359 PANTHER SPERMIDINE/SPERMINE SYNTHASE 57 349 IPR001045 GO:0003824
Apr1g0834 359 Gene3D Spermidine synthase, tetramerisation domain 47 118 IPR037163 -
Apr1g0834 359 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 64 301 IPR030374 -
Apr1g0834 359 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 143 156 IPR030373 -
Apr1g0834 359 Pfam Spermine/spermidine synthase domain 122 308 - -
Apr1g0834 359 PANTHER SPERMIDINE SYNTHASE 57 349 - -
Apr1g0834 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 62 348 IPR029063 -
Apr1g0834 359 Pfam Spermidine synthase tetramerisation domain 65 119 IPR035246 -
Apr1g0834 359 TIGRFAM speE: spermidine synthase 66 344 IPR001045 GO:0003824
Apr1g0834 359 Gene3D Vaccinia Virus protein VP39 119 351 IPR029063 -
Apr1g0834 359 CDD AdoMet_MTases 164 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0834 Apr-Chr1 10870535 10889987 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0834 K00797 - gmx:100785862 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0834 1 10870535 10889987 Apr9g3086 9 37649114 37656019 ECH
Apr1g0834 1 10870535 10889987 Apr1g0834 1 10870535 10889987 ECH