Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3067 ATGGAACGCACAACATCATTCAACGACCCTATTCACCTCCAAACAAGGTTAACCTCACAACCAAGCCTCGCATCAGTGCCTTCCCTTAATTCACACTCTCATCTCTTCAACCCTTCAACCATCTCTCACACGTGTCTCACAACCCTCAAACCCCACGCATCCTACACATCCTCGCTCACCCTCGCAGGGAAATTCCTCTACACAGCTTCATCAGACAGAGAAATCAAGTCCTGGAACCATGCACTTTTTCACTCTCAACAACCACCACCACCCACTAACACTGTTATTGCTGGAAAGGGTGCTGTGAAATCCATCGTAGTTCACTCAGACAAACTCTTCAGCGCTCATCAAGATCACAAAATCCGCGTTTGGAAGATCACCAACCACGAACATGGCCAACACAAGTACACACGTGTGGCCACGCTCCCAACCCTTGGTGACCGTGTCTCAAAGATGTTGATCCCCAAAAACCACGTTCAGATTCGAAGGCACAAAAAGTGCACCTGGGTTCACCACGTTGACACAGTTTCTTCCTTGGCTTTGTCCAAAGACGGTACCTTCTTGTATTCGGTTTCATGGGATAGAACAATTAAGATTTGGAGAACCAAAGATTTCGCTTGTTTGGAATCAGTGCGTAACGCACACGACGATGCTATAAACGCGGTTGCAGTTTCTTACGATGGGTTTGTTTACACTGGATCAGCGGATAAGAGAATTAAGGTTTGGAACAAAAGGGAAGGGGAAAAGAAACACTCTTTGGTGGATACGTTGGAGAAACATAACTCTGGGATTAATGCGTTGGCTCTACGTGGTGATGGGTCTTTGCTATATTCGGGTGCATGTGATAGATCTATATTGGTTTCGGAGAAGAGTGAAAATGGTAAATTGGTTGTGGTGGGTGCGCTTAGGGGACACACTAGGTCAATTCTATGCTTGGCTGTGGTCGCGGATTTGGTGTTCAGTGGGTCTGAGGATAAAACCATTCGAATTTGGAGAGGTGTTGAGAAGGATTATTGTTGTTTGGGTGTTTTAGAAGGGCATAGAAGTCCAATTAAGAGCTTAACTGCAATAGTTGATCATAGTGATGACACCTCCGAAGCATCTTTTCTTGTCTATAGTGGTAGTTTGGACTGTGACATTAAGGTTTGGCAGGTTTTTATTACTGTTCTTTAA 1173 0.4501 MERTTSFNDPIHLQTRLTSQPSLASVPSLNSHSHLFNPSTISHTCLTTLKPHASYTSSLTLAGKFLYTASSDREIKSWNHALFHSQQPPPPTNTVIAGKGAVKSIVVHSDKLFSAHQDHKIRVWKITNHEHGQHKYTRVATLPTLGDRVSKMLIPKNHVQIRRHKKCTWVHHVDTVSSLALSKDGTFLYSVSWDRTIKIWRTKDFACLESVRNAHDDAINAVAVSYDGFVYTGSADKRIKVWNKREGEKKHSLVDTLEKHNSGINALALRGDGSLLYSGACDRSILVSEKSENGKLVVVGALRGHTRSILCLAVVADLVFSGSEDKTIRIWRGVEKDYCCLGVLEGHRSPIKSLTAIVDHSDDTSEASFLVYSGSLDCDIKVWQVFITVL* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3067 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 210 IPR001680 GO:0005515
Apr9g3067 390 Gene3D - 161 387 IPR015943 GO:0005515
Apr9g3067 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 169 200 - -
Apr9g3067 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 252 IPR001680 GO:0005515
Apr9g3067 390 Pfam WD domain, G-beta repeat 170 200 IPR001680 GO:0005515
Apr9g3067 390 Pfam WD domain, G-beta repeat 300 331 IPR001680 GO:0005515
Apr9g3067 390 Pfam WD domain, G-beta repeat 254 286 IPR001680 GO:0005515
Apr9g3067 390 Pfam WD domain, G-beta repeat 339 383 IPR001680 GO:0005515
Apr9g3067 390 Pfam WD domain, G-beta repeat 208 243 IPR001680 GO:0005515
Apr9g3067 390 CDD WD40 45 384 - -
Apr9g3067 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 212 243 - -
Apr9g3067 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 331 IPR001680 GO:0005515
Apr9g3067 390 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 390 IPR045182 -
Apr9g3067 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 331 - -
Apr9g3067 390 SUPERFAMILY WD40 repeat-like 41 384 IPR036322 GO:0005515
Apr9g3067 390 PRINTS G protein beta WD-40 repeat signature 188 202 IPR020472 -
Apr9g3067 390 PRINTS G protein beta WD-40 repeat signature 230 244 IPR020472 -
Apr9g3067 390 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Apr9g3067 390 PANTHER MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN 1 390 - -
Apr9g3067 390 Gene3D - 14 160 IPR015943 GO:0005515
Apr9g3067 390 SMART WD40_4 337 384 IPR001680 GO:0005515
Apr9g3067 390 SMART WD40_4 295 332 IPR001680 GO:0005515
Apr9g3067 390 SMART WD40_4 204 243 IPR001680 GO:0005515
Apr9g3067 390 SMART WD40_4 42 79 IPR001680 GO:0005515
Apr9g3067 390 SMART WD40_4 162 201 IPR001680 GO:0005515
Apr9g3067 390 SMART WD40_4 88 125 IPR001680 GO:0005515
Apr9g3067 390 SMART WD40_4 250 289 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3067 Apr-Chr9 37482558 37483931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3067 162 385 Miscellaneous Gene Families AT5G08390 24.561 1.60e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3067 - - gmx:100801906 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0854 1 11362879 11364191 Apr9g3067 9 37482558 37483931 ECH
Apr9g3067 9 37482558 37483931 Apr9g3067 9 37482558 37483931 ECH
Apr9g3067 9 37482558 37483931 Apr1g0854 1 11362879 11364191 PCT