Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0854 ATGGATCAGTACCAGCGATCTTATAGTGTGCCTTCCTCATCTCACTCTAACAACCACCAACCAGGCTTAACATCCCTCACATCACAACGCAGCCTCATCTCAATTCCTTCACTCAACAACTCCAAATCTCACCACAATAACACTTCCATCACCAGCAACAACCACTACTGCCTCACAACCCTCAAAGGCCACACCTCCTACATATCCTCCTTAACCCTTTCTGGCAAATTCCTCTACACAGGTTCTTCGGACAGAGAAATCAGATCCTGGAACCGCACCCCGTTTCTTTCTGAATCACCAAACTCAACCTATAACATAGTTGTTGCTGGCGAAGGTGCTGTGAAGTCCTTGGTAATTCAATCTGATAAACTTTTCAGCGCCCACCAAGACCACAAAATTCGGGTTTGGAAAATTACTAACAGTAACCACCAACCTGAACAACAAAAATACACCCATTTAGCCACACTCCCTACCCTTGGTGACCGTGCCTCCAAGGTGTTGATCCCCAAGAACCATGTCCAAATCCGAAGGCACAAGAAATGCACGTGGGTTCATCACGTGGACACAGTTTCTTCCCTTGCCTTGTCCCAAGATGGTACCTTGTTGTACTCAGTTTCATGGGACAGGACAATCAAAATCTGGAGAACAAAAGACTTCACATGTTTGGAATCAGTTACCAACGCACATGAAGATGCCATAAACGCAGTTGTAGTTTCCTATGATGGGGTCGTTTACACCGGATCAGCGGATAAGAGAATCAAGGTGTGGAAAAAAAATCAAGGAGAAAAAAAACACACCCTTTTGGACACCTTGGAGAAACACAACTCTGGAATCAATGCCTTGGCGCTGAGCAGTGATGAGACCCTTTTGTATTCTGGTGCATGTGATAGGTCTATATTGGTTTGGGAGAAGGAAGAAGGGGGTGATGGGAAAATGGGGGTGGTGGGTGCGTTAAGGGGCCACACAAAGTCCATATTGTGTTTGGCTGTTGTGGCGGATTTGGTGTGTAGTGGTTCTGCCGATACAACAATCCGAATTTGGAGAGGGGTTTATAGAGAAGAATATTCTTGTTTAGCTGTTTTAGAAGGGCATAAAGGTTCAATTAAGTGCCTAACTGCAGTGGTTGACCATTGGAACACATCAGAGTCCCAAGCATCTTTCTTAGTCTATAGCGGCAGTTTGGACTGCGACATTAAGGTTTGGCAGATTTTAGTTCCTGCTAGCTAA 1227 0.4523 MDQYQRSYSVPSSSHSNNHQPGLTSLTSQRSLISIPSLNNSKSHHNNTSITSNNHYCLTTLKGHTSYISSLTLSGKFLYTGSSDREIRSWNRTPFLSESPNSTYNIVVAGEGAVKSLVIQSDKLFSAHQDHKIRVWKITNSNHQPEQQKYTHLATLPTLGDRASKVLIPKNHVQIRRHKKCTWVHHVDTVSSLALSQDGTLLYSVSWDRTIKIWRTKDFTCLESVTNAHEDAINAVVVSYDGVVYTGSADKRIKVWKKNQGEKKHTLLDTLEKHNSGINALALSSDETLLYSGACDRSILVWEKEEGGDGKMGVVGALRGHTKSILCLAVVADLVCSGSADTTIRIWRGVYREEYSCLAVLEGHKGSIKCLTAVVDHWNTSESQASFLVYSGSLDCDIKVWQILVPAS* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0854 408 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 406 IPR045182 -
Apr1g0854 408 Gene3D - 174 406 IPR015943 GO:0005515
Apr1g0854 408 Pfam WD domain, G-beta repeat 356 401 IPR001680 GO:0005515
Apr1g0854 408 Pfam WD domain, G-beta repeat 221 257 IPR001680 GO:0005515
Apr1g0854 408 Pfam WD domain, G-beta repeat 57 91 IPR001680 GO:0005515
Apr1g0854 408 Pfam WD domain, G-beta repeat 184 214 IPR001680 GO:0005515
Apr1g0854 408 Pfam WD domain, G-beta repeat 268 302 IPR001680 GO:0005515
Apr1g0854 408 Pfam WD domain, G-beta repeat 316 347 IPR001680 GO:0005515
Apr1g0854 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 303 - -
Apr1g0854 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 347 - -
Apr1g0854 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 224 IPR001680 GO:0005515
Apr1g0854 408 MobiDBLite consensus disorder prediction 1 24 - -
Apr1g0854 408 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 10 406 - -
Apr1g0854 408 SUPERFAMILY WD40 repeat-like 46 403 IPR036322 GO:0005515
Apr1g0854 408 SMART WD40_4 218 257 IPR001680 GO:0005515
Apr1g0854 408 SMART WD40_4 264 303 IPR001680 GO:0005515
Apr1g0854 408 SMART WD40_4 311 348 IPR001680 GO:0005515
Apr1g0854 408 SMART WD40_4 97 137 IPR001680 GO:0005515
Apr1g0854 408 SMART WD40_4 176 215 IPR001680 GO:0005515
Apr1g0854 408 SMART WD40_4 354 402 IPR001680 GO:0005515
Apr1g0854 408 SMART WD40_4 54 91 IPR001680 GO:0005515
Apr1g0854 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 91 IPR001680 GO:0005515
Apr1g0854 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 303 IPR001680 GO:0005515
Apr1g0854 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 214 - -
Apr1g0854 408 CDD WD40 57 402 - -
Apr1g0854 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 91 - -
Apr1g0854 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 347 IPR001680 GO:0005515
Apr1g0854 408 Gene3D - 28 173 IPR015943 GO:0005515
Apr1g0854 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 266 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0854 Apr-Chr1 11362879 11364191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0854 228 403 Miscellaneous Gene Families AT5G08390 27.322 6.50e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0854 - - gmx:100815608 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0854 1 11362879 11364191 Apr9g3067 9 37482558 37483931 ECH
Apr1g0854 1 11362879 11364191 Apr1g0854 1 11362879 11364191 ECH
Apr9g3067 9 37482558 37483931 Apr1g0854 1 11362879 11364191 PCT