Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3049 ATGAAGAGAGGAAGAATAGCAAAGTTGGACACATTTATATCATTTAGCAAGCAACGATCCATTCAGATTCTCATCGCTATTGCACTCTTATACCTCATCTTGATCACCCTCGAAATCCCCTTCGTCGTTAGAACCCAACAGCAACACCAACCACTCACTCAAACCCTACAACACCTTCACCGCCAAAACGCTGTCGTCTCCTCTTTGATCCTAAACGACGCCGCTTTCGATTCCAAGCTTTACAAAACCGCGTGCCGAGTGGGGAAAACCGTTTGGGAAGAGCTACAACTAGAATCAGGGAACCCGCGAAGCGTGATCACGAAACCCGAAAACCGATCCGGGTCGTGCCCGCGATCCTTTGCGTTATCCGGGTCGGAGTTTCTGGGCCGCGGGAATGTGGCGGTTATTCCGTGTGGGCTCACGTTAGGGTCCCACATAACGGTGGTTGGGATACCGTTAACGATGAAACGGAAAACGTGTCAGTTTGTGATGGAGTTGCAGGGGTTGACGATCGTGGAAGGGGAAGAACCACCTAGGATATTGCATTTCAATCCTAGGTTGAAAGGGGATTGGAGTGGGAAACCCGTGATTGAACTCAACACTTGTTACCGCATGCATTGGGGTTCTGCTTTGCGTTGTGATGGTTGGAAATCCAGGGCTGATGAAGATACTGTTGATGGGTTGTTGAAGTGTGAGAAGTGGATTTGGGGTGATGATGTGGATAGGCATGCAGGGGAGTCTAATGCTGCGTGGTGGTTGAAGAGACTCATTGGTCGAACAAAGCAAGTAACTGTTGATTGGCCATTCCCTTTTTCTGAGAACAAGCTATTTGTTCTTACTCTGAGTGCTGGATTGGAGGGTTATCATGTTAATGTTGATGGGAGGCATGTAACTTCTTTTCCTTATAGCACGGGGTTTACTCTTGAGGATGCCACTGGTCTTACTTTGAGTGGGGACATTGATGTCCGTTCTGTATTTGCCGCCTCTTTGCCTTCAGCGCATCCTGGCATTTCACCTCAGCAGCATCTTGAATTTTCAACAAGATGGCGTGCTCCAGAGCTTCCTTACTCTGGCGTGGAATTATTTGTTGGCGTCCTTTCGGCTGGAAACCATTTTGCTGAACGGATGGCTCTGAGGAAGTCATGGATGCAGCATAGCCTTGTCAAGTCTTTGAAAGTGGTGGCTCGTTTCTTCGTGGCACTGCACCAGAGGAAAGAAGTTAATGTAGAGTTGAAGAAGGAAGCAGAATATTTTGGTGATATTGTTATAGTTCCTTACATGGATAACTATGACCTTGTTGTGTTGAAAACGGTGGCCATATGTGAATACGGAGTTCGCACAGTTTCTGCAGGGTATATCATGAAGGGTGACGATGACACTTTTGTAAGAGTGGATGCTATTATAAATGAGGCAAGGAATGTTCCAATTTCTAGGAGTTTTTATATCGGGAACATTAATTATCACCACAAACCCTTGCGCCATGGTAAATGGGCTGTTACATATGAGGAGTGGCCTGAAGAGGATTACCCACCCTATGCTAACGGACCGGGTTATGTTTTGTCTTCTGATATTGCACGCTACATTGTATCTCAATTTGAGATGCACAAGTTAAGGTTGTTTAAGATGGAAGATGTGAGCATGGGAATGTGGGTGGAGCAATTTAACCGAACGAAACCGGTATACTATATGCACAGCTTCAAGTTCTGCCAATTTGGTTGTGTAGAAGACTATTATACAGCCCATTACCAATCGCCTAGGCAGATGATGTGCTTGTGGGATAAATTCCAGACGCAGACAAGGCCTCAATGTTGCAACATGAGATAA 1824 0.4605 MKRGRIAKLDTFISFSKQRSIQILIAIALLYLILITLEIPFVVRTQQQHQPLTQTLQHLHRQNAVVSSLILNDAAFDSKLYKTACRVGKTVWEELQLESGNPRSVITKPENRSGSCPRSFALSGSEFLGRGNVAVIPCGLTLGSHITVVGIPLTMKRKTCQFVMELQGLTIVEGEEPPRILHFNPRLKGDWSGKPVIELNTCYRMHWGSALRCDGWKSRADEDTVDGLLKCEKWIWGDDVDRHAGESNAAWWLKRLIGRTKQVTVDWPFPFSENKLFVLTLSAGLEGYHVNVDGRHVTSFPYSTGFTLEDATGLTLSGDIDVRSVFAASLPSAHPGISPQQHLEFSTRWRAPELPYSGVELFVGVLSAGNHFAERMALRKSWMQHSLVKSLKVVARFFVALHQRKEVNVELKKEAEYFGDIVIVPYMDNYDLVVLKTVAICEYGVRTVSAGYIMKGDDDTFVRVDAIINEARNVPISRSFYIGNINYHHKPLRHGKWAVTYEEWPEEDYPPYANGPGYVLSSDIARYIVSQFEMHKLRLFKMEDVSMGMWVEQFNRTKPVYYMHSFKFCQFGCVEDYYTAHYQSPRQMMCLWDKFQTQTRPQCCNMR* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3049 607 Pfam Galactosyltransferase 374 554 IPR002659 GO:0006486|GO:0016020|GO:0016758
Apr9g3049 607 SMART Gal_bind_lectin_2 136 327 IPR001079 GO:0030246
Apr9g3049 607 CDD GLECT 136 326 IPR001079 GO:0030246
Apr9g3049 607 Pfam Galactoside-binding lectin 134 326 IPR001079 GO:0030246
Apr9g3049 607 Gene3D - 245 326 - -
Apr9g3049 607 Gene3D - 132 224 - -
Apr9g3049 607 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 9 50 IPR002659 GO:0006486|GO:0016020|GO:0016758
Apr9g3049 607 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 55 607 IPR002659 GO:0006486|GO:0016020|GO:0016758
Apr9g3049 607 SUPERFAMILY Concanavalin A-like lectins/glucanases 134 326 IPR013320 -
Apr9g3049 607 Gene3D - 353 605 - -
Apr9g3049 607 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 55 607 - -
Apr9g3049 607 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 9 50 - -
Apr9g3049 607 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 132 328 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3049 Apr-Chr9 37284793 37287666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3049 5 607 Glycosyltransferase AT1G74800 61.712 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3049 K20843 - gmx:100800292 1010.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0876 1 11715685 11719268 Apr9g3049 9 37284793 37287666 ECH
Apr9g3049 9 37284793 37287666 Apr9g3049 9 37284793 37287666 ECH
Apr9g3049 9 37284793 37287666 Apr1g0876 1 11715685 11719268 PCT