Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0876 ATGAAGAGGAAGCTCGAAAACTTGATGTGGTTAACGCGGAAAAGATCGATTCAGTTTCTGATAGGAGTGGCTCTGTTGTACCTCATCCTTGTCACGGTCGAAATCCCTTTCGTCTTCAAAACCGACTTCACCACCGTCACCACTCGCCCTCCAAGGCTTCTCAGCGAGGAGGACTCGCAACAAAGACAATCCCCAACTCGCCCTTTTAAAACTGTTTCCAACGCCGCCTCGCCGAGTCAACTCGCCCGCCGCGACATCGTTTCTTCGTTGGTCTTAAACGACGCCGCGTTCGACCTCAGCTTCAACGACGGGTCGTTGGAGCTATACAAGCTAGTGAAAAACGCGCGCGAGGTGGGGCTGAACCTCTGGGAAGACCTCGAATCCGGCAACTCGCGAAGCGTTATTTCGAAGCCCGAGAACCGGTCCGGTTCGTGTCCCGCTTCGATATCACTGGCCGGTTCGGATATTTCGGGCGTGGTGGCGCTTCCTTGTGGACTCACATTGGGGTCCCACGTAACGGTCGTTGGAAAGCCGTTGGCGGCTAAGCCGGATTTGGAGCCGAAGATAACGGTGGTGACGGAGGACGGTGAAGCCGTTATGGTGTCGCAGTTCGTGGTGGAGTTGCAAGGGTTGAAAACGGTTGATGGTGAAGAGCCTCCTAGGGTTTTTCACTTCAACCCGAGGTTGAAGGGTGATTGGAGTGGGAAACCGGTGATTGAACTCAACACGTGTTACCGGATGCAGTGGGGTTCCGCTCTCAGGTGCGATGGCTGGAAATCCAAGGCTGATGAAGATACCGTTGATAGGATGGTGAAGTGTGAAAAGTGGATTGAGGATGGTGAAGATCACTTGGAGGAGTCTAAGGCAAAGTGGTGGTTGAATAGACTGATAGGGCGCTCGAAGAAAGTAACGGTTGATTGGCCATTCCCCTTTTCTGAGAACAAGCTATTTGTTCTAACTATTAGTGCTGGGTTGGAGGGGTATCATGTTACTGTTGATGGGAGGCATGTGGCATCTTTTCCTTATCGCGCTGGTTTTACTCTTGAGGATGCCACTGGGCTTTCTTTGAGTGGAGACATTGATGTTCACTCCGTATTTGCAGCCTCTTTGCCTTCGTCGCATCCCAGTTTTGCCCCGCAGCGCCACCTTGAATTTTCTACCAGATGGCGTGCCCTGCCACTTCCTGGCTCTGGTGTAGAGTTGTTCATTGGTGTCCTCTCGGCTGGAAACCATTTTGCTGAGCGGATGGCTGTAAGGAAGTCATGGATGCAGCATAGGCTCATCAAATCTGGACTAGTGGTTTCTCGTTTCTTTGTGGCACTGCACCCACGACAAGAAATTAATGTAGAGTTGAGGAAGGAAGCAGAATATTTTGGTGACATTGTTATAGTGCCTTACTTGGATAATTATGACCTTGTTGTGTTGAAAACAGTGGCCATATGTGAATATGGGGTTCATACTGTTTCTGGTAAGTACATCATGAAAGGTGATGATGACACTTTCGTTAGGGTGGATGCTGTTATCAATGAAGCAAGGAATGTTCCAGATGATATGAGCTTTTATATTGGGAACATAAACTACTACCACAAACCCTTGCGCTATGGGAAATGGGCAGTGACATACGAGGAGTGGCCAGAAGAGGATTATCCACCCTATGCAAATGGACCGGGTTATATCTTGTCATCAGATATTGCACGCTATATTGTATCTGAATTTGAAATGCATAAATTAAGGGTTAATGAACATTTTTATATATATTGCACCTTTCTCGTTCATGTATACTTGAATTTCTTTCGTTTGAAATTCTGTTTGGTTGAATGTTTCCTTGATTTCTTCTTTATGCAGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTACAGCAATTTAACAGCTCAAAACCAGTACACTACTCACATAGCTTCAAGTTCTGCCAGTTTGGTTGCATTGAAGACTATTACACTGCCCATTACCAATCGCCTAGGCAGATGGTGTGCCTGTGGGATAAACTGCAAAGGCAGACAAGGCCTCAATGCTGCAATATGAGATGA 2055 0.4749 MKRKLENLMWLTRKRSIQFLIGVALLYLILVTVEIPFVFKTDFTTVTTRPPRLLSEEDSQQRQSPTRPFKTVSNAASPSQLARRDIVSSLVLNDAAFDLSFNDGSLELYKLVKNAREVGLNLWEDLESGNSRSVISKPENRSGSCPASISLAGSDISGVVALPCGLTLGSHVTVVGKPLAAKPDLEPKITVVTEDGEAVMVSQFVVELQGLKTVDGEEPPRVFHFNPRLKGDWSGKPVIELNTCYRMQWGSALRCDGWKSKADEDTVDRMVKCEKWIEDGEDHLEESKAKWWLNRLIGRSKKVTVDWPFPFSENKLFVLTISAGLEGYHVTVDGRHVASFPYRAGFTLEDATGLSLSGDIDVHSVFAASLPSSHPSFAPQRHLEFSTRWRALPLPGSGVELFIGVLSAGNHFAERMAVRKSWMQHRLIKSGLVVSRFFVALHPRQEINVELRKEAEYFGDIVIVPYLDNYDLVVLKTVAICEYGVHTVSGKYIMKGDDDTFVRVDAVINEARNVPDDMSFYIGNINYYHKPLRYGKWAVTYEEWPEEDYPPYANGPGYILSSDIARYIVSEFEMHKLRVNEHFYIYCTFLVHVYLNFFRLKFCLVECFLDFFFMQLFKMEDVSMGMWVQQFNSSKPVHYSHSFKFCQFGCIEDYYTAHYQSPRQMVCLWDKLQRQTRPQCCNMR* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0876 684 Pfam Galactoside-binding lectin 160 366 IPR001079 GO:0030246
Apr1g0876 684 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 614 684 - -
Apr1g0876 684 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 7 579 - -
Apr1g0876 684 Gene3D - 287 369 - -
Apr1g0876 684 SUPERFAMILY Concanavalin A-like lectins/glucanases 159 366 IPR013320 -
Apr1g0876 684 MobiDBLite consensus disorder prediction 50 76 - -
Apr1g0876 684 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 158 368 IPR001079 GO:0030246
Apr1g0876 684 SMART Gal_bind_lectin_2 162 367 IPR001079 GO:0030246
Apr1g0876 684 Gene3D - 151 274 - -
Apr1g0876 684 Gene3D - 397 680 - -
Apr1g0876 684 Pfam Galactosyltransferase 414 585 IPR002659 GO:0006486|GO:0016020|GO:0016758
Apr1g0876 684 CDD GLECT 159 366 IPR001079 GO:0030246
Apr1g0876 684 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 614 684 IPR002659 GO:0006486|GO:0016020|GO:0016758
Apr1g0876 684 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 7 579 IPR002659 GO:0006486|GO:0016020|GO:0016758
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0876 Apr-Chr1 11715685 11719268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0876 11 684 Glycosyltransferase AT1G74800 59.742 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0876 K20843 - gmx:100795908 1113.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0876 1 11715685 11719268 Apr9g3049 9 37284793 37287666 ECH
Apr1g0876 1 11715685 11719268 Apr1g0876 1 11715685 11719268 ECH
Apr9g3049 9 37284793 37287666 Apr1g0876 1 11715685 11719268 PCT