Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g3021 ATGGTGGTAGCAATGTCGACTCCTGCTAGGAAGAGACTCATGAGAGACTTCAAGAGGCTGCAACAAGACCCACCTGCAGGAATCAGTGGAGCGCCCCAGGATAACAACATAATGCTGTGGAATGCTGTCATTTTTGGTCCTGACGATACTCCATGGGATGGAGGTACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTCGTCTCTCGAATGTTTCATCCAAACATTTATGCGGATGGAAGTATTTGTCTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGTAGCTGCCATACTCACTTCTATTCAGTCATTGCTTTGTGATCCCAACCCAAACTCTCCTGCGAACTCAGAAGCAGCTCGAATGTTTAGCGAGAACAAGCGTGAGTACAATCGAAGAGTGAGGGAAATTGTGGAGCAGAGTTGGACAGCTGACTAG 471 0.4501 MVVAMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g3021 156 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 81 96 IPR023313 -
Apr9g3021 156 SUPERFAMILY UBC-like 3 154 IPR016135 -
Apr9g3021 156 Pfam Ubiquitin-conjugating enzyme 12 148 IPR000608 -
Apr9g3021 156 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 3 156 - -
Apr9g3021 156 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 156 - -
Apr9g3021 156 CDD UBCc 11 149 IPR000608 -
Apr9g3021 156 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 8 154 IPR000608 -
Apr9g3021 156 SMART ubc_7 11 154 - -
Apr9g3021 156 Gene3D Ubiquitin Conjugating Enzyme 3 152 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g3021 Apr-Chr9 37050244 37054145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g3021 11 124 Miscellaneous Gene Families AT1G17280 31.092 4.98e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g3021 K10573 - csin:114267922 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0894 1 12068649 12076769 Apr9g3021 9 37050244 37054145 ECH
Apr9g3021 9 37050244 37054145 Apr9g3021 9 37050244 37054145 ECH
Apr7g1500 7 22172142 22175998 Apr9g3021 9 37050244 37054145 PCT