Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0894 ATGTCGACTCCTGCTAGGAAGAGGCTGATGAGAGATTTTAAGAGGTTGCAACAAGACCCGCCTGCAGGAATCAGTGGTGCCCCGCAGGATAACAATATAATGCTGTGGAATGCCGTCATATTTGGTCCTGATGATACTCCATGGGATGGAGGCACGTTCAAGTTGACGCTCCAATTTACTGAGGATTATCCAAATAAACCACCAACTGTAAGATTTGTGTCTCGCATGTTTCATCCAAATATTTATGCAGATGGAAGTATTTGTCTGGATATCTTACAAAATCAGTGGAGTCCTATATATGATGTGGCTGCTATACTCACATCTATCCAGTCATTGCTTTGCGATCCCAACCCAAATTCTCCTGCAAACTCTGAAGCAGCTCGAATGTTTAGTGAGAACAAGCGTGAGTACAATCGAAGAGTGAGGGAAATTGTGGAGCAGAGTTGGACAGCTGATTAA 459 0.4357 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0894 152 SMART ubc_7 7 150 - -
Apr1g0894 152 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Apr1g0894 152 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 150 IPR000608 -
Apr1g0894 152 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Apr1g0894 152 Pfam Ubiquitin-conjugating enzyme 8 144 IPR000608 -
Apr1g0894 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 1 152 - -
Apr1g0894 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 152 - -
Apr1g0894 152 CDD UBCc 7 145 IPR000608 -
Apr1g0894 152 SUPERFAMILY UBC-like 1 150 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0894 Apr-Chr1 12068649 12076769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0894 7 120 Miscellaneous Gene Families AT1G17280 31.092 5.29e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0894 K10573 - ncol:116247691 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0894 1 12068649 12076769 Apr9g3021 9 37050244 37054145 ECH
Apr1g0894 1 12068649 12076769 Apr1g0894 1 12068649 12076769 ECH