Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2568 ATGGCAACCGAGAGTCCAATCAGGATCTCTGAAGCTGGGGGGAAATGGCCGTCTCTTAAGGAAGCTGCAACTTTTGGTTCACCATCTTCCCATCACATGGCAACAGAGGATTTGGGGATACTTTTGAAGGGCCATGGATTTCGAGGCAGTGGAAAGGATGTGGTACCCAATCGCAGTGGCAGTGCACCTCCAAGCATGGAGGGCTCATTTCTGGCAATAGAAAATCTACTATCCCAGAACACCACCCGGAATGCGAGTTTGGGATTGCAGAACAGAGCTATGCAAAAATATGATAGCAGTAAAGGTTCTTTTCATTTGTCACGAGGAACTCTTGCAACACACAAGGAGGAGTCTGAGGATGATTCGACTCAACAGCTGTATGATAATGAATTTGATAAGACTAGTGGAAAATGGCATAGACAGGATGCAGCTTCAACGTCATCTCAGCTCAAAAATCTAGTACTGGAAGATCTTCCCCCTTCCATGTCACCTGTATATAATAAATCTCTTGGAGTTGTGGATGAGCTGATCAGTTCTTCTCATGACTCTCCTATCGCCACACTAGATGCTGCAAAACCTACCATAGGTGCAGATGATTTAAGGCTGACATCAACTGTTGTTTCCCCTGCCCCTGTCACAAGTTCATCACCTCTCAGCTTCACTGGAAGCATGGGCTTTAGTGATTTAGATGTTACAATCATGGAATCTCAATTAAGGGCTCTTAGTGTATCTAATCTACCAAATTCAGAAAGCCAAAGTTATGATGATAAATGGAAAAATTGCGTCCAGAATAATTTGACGCAACATCACCAACAAAACAATCCATGTGAAGTTCCTAGCACCAATTCTCAAAATGAAAAAAGTGCATATGTTGGTATGGAACAGTTTCTTCACAAGCCCCATCACAATTTGTCTGATGTCCAGCCAGTACTGCAGCCATCAGGGTTTACACCACCACTATATGCTACAGCAGCAGCTTATATGACCTCAGCAAATCCATTTTATGCTAATTTGCAGGCTTCAGGGATATATTCTCCCCAATACGTAGGTGGATACCCTTTTAATGCCGCAGCTGTTCCTCCATATATTGCTGCATACCCTCCTCATGGTGCTGTACCACTTGTTGATGGGGCTACTGGTTCTAGTTTTACTCCCCAAGCAGCAGGGGTTTCTACTGCAGGAAGCATTTCACATGGAGCTGAGATGATACACTCAAACAAGTTTTTTGGACAATTTGGATTTCCTCTTCATCCTTCTTTCAGTGATCCACTTTACATGCAATATCATCAGCAACCTTTTGTGGAAGGATATGGTGTTTCTAGTCATCCACTGGCACCTAGAGCAAGTGTTGGTAGCCAAATTGGCCTCTTTGATTCCCAAAAAAGGCCCCATAGTGGTGTGTACTTGGATGACAAAAAATTACATCATCAGAGAAGTGGTGCTAATTTGAACTCTAATAGAGGTGGGCTAATGATGCCAGGTTATTTTGGACAGCCTTCAAATATGGGTTTTGTAGCCCAGTATCCAAGTTCACCACTTTCGAGACCTGTTCTATCTGGATACCCAGAAGGCAGTCCTGGCCTTCTAGGTGGAAGGAATGAAATGAAACTCTCTCCAGCTTCTGGGAAAAATGGAGGTTTAATGTCTGGATGGCAAGGTCAGAGAGGCTTTGACAGTGCTCATGACCCCAAAGTTGTTATTTTTCTAGAAGAATTAAAATCTGGCAAGGGTCGCAGATTTGAGCTGTCTGATATTATTGGACATATTGTTGAATTTAGCACTGATCAGCATGGGAGCCGTTTTATACAGCAGAAGTTGGAAATTTGTGGTGTCGAAGAGAAGGAACTAGTGTTCAAAGAGGTTCTTCCACATACTTCTAAACTAATGACTGATGTATTTGGCAACTATGTAATCCAGAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAAGGAACTTGCAAATAGACTTCTCGGTCAGATACTGCCTTTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATCGATCTTGAACAGAAAGCTCAGCTTGTTTATGAGCTGGATGGACATGTTATGAGATGTGTTCGTGACCAAAATGGGAATCATGTAATACAGAAATGCGTTGAATCTATTCCAACCAAAAAAATTGGCTTTATAATATCTGCATTCCGTGGGCAAGTTGCTATTCTATCTATGCATCCCTATGGTTGCCGAGTCATACAGAGAGTCCTAGAGCATTGTTCAAATGAAGTTCAATGTCAGTTTATTGTGGATGAAATCTTGGAGTCAGTTTTTACTCTTGCTGAGGACCAGTATGGCAATTATGTTACTCAGCATGTGTTGGAGAGAGGAAAGCCTCAGGAAAGGAGCCAAATTATTAGCAAGCTGTCAGGACATATTGTACAATTAAGCCAGCATAAGTTTGCATCAAATGTTGTTGAGAAATGTTTGGAGTATGGTGATGCAACTGAACGGCAGTTGTTAATTGCAGAGATTGTTGGACATGACAAACAAAATGATAATTTATTGACAATGATGAAAGACCAATTTGCAAATTATGTGGTCCAGAAAGTTCTTGAGATCTGTTCTGAAAATCAGCGAGCAATGTTACTTTCTCGCGTAAGACTTCATGCTCATGCTTTGAAGAAATACACTTACGGAAAGCATATTGTGGCTCGGTTTGAACAGCTACTTGGAGAAGGGCTAGGTACAGTCAAGGATTCTTGTTTCTCAATATCTGCTTCTCGTCCTTGTGGAGTGGTTACATGTTGA 2790 0.4208 MATESPIRISEAGGKWPSLKEAATFGSPSSHHMATEDLGILLKGHGFRGSGKDVVPNRSGSAPPSMEGSFLAIENLLSQNTTRNASLGLQNRAMQKYDSSKGSFHLSRGTLATHKEESEDDSTQQLYDNEFDKTSGKWHRQDAASTSSQLKNLVLEDLPPSMSPVYNKSLGVVDELISSSHDSPIATLDAAKPTIGADDLRLTSTVVSPAPVTSSSPLSFTGSMGFSDLDVTIMESQLRALSVSNLPNSESQSYDDKWKNCVQNNLTQHHQQNNPCEVPSTNSQNEKSAYVGMEQFLHKPHHNLSDVQPVLQPSGFTPPLYATAAAYMTSANPFYANLQASGIYSPQYVGGYPFNAAAVPPYIAAYPPHGAVPLVDGATGSSFTPQAAGVSTAGSISHGAEMIHSNKFFGQFGFPLHPSFSDPLYMQYHQQPFVEGYGVSSHPLAPRASVGSQIGLFDSQKRPHSGVYLDDKKLHHQRSGANLNSNRGGLMMPGYFGQPSNMGFVAQYPSSPLSRPVLSGYPEGSPGLLGGRNEMKLSPASGKNGGLMSGWQGQRGFDSAHDPKVVIFLEELKSGKGRRFELSDIIGHIVEFSTDQHGSRFIQQKLEICGVEEKELVFKEVLPHTSKLMTDVFGNYVIQKFFEYGSPEQRKELANRLLGQILPLSLQMYGCRVIQKALEVIDLEQKAQLVYELDGHVMRCVRDQNGNHVIQKCVESIPTKKIGFIISAFRGQVAILSMHPYGCRVIQRVLEHCSNEVQCQFIVDEILESVFTLAEDQYGNYVTQHVLERGKPQERSQIISKLSGHIVQLSQHKFASNVVEKCLEYGDATERQLLIAEIVGHDKQNDNLLTMMKDQFANYVVQKVLEICSENQRAMLLSRVRLHAHALKKYTYGKHIVARFEQLLGEGLGTVKDSCFSISASRPCGVVTC* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2568 929 ProSiteProfiles Pumilio RNA-binding repeat profile. 801 836 IPR001313 GO:0003723
Apr9g2568 929 CDD Pumilio 579 899 IPR033712 GO:0003723
Apr9g2568 929 SMART pum_5 728 764 IPR001313 GO:0003723
Apr9g2568 929 SMART pum_5 692 727 IPR001313 GO:0003723
Apr9g2568 929 SMART pum_5 584 619 IPR001313 GO:0003723
Apr9g2568 929 SMART pum_5 656 691 IPR001313 GO:0003723
Apr9g2568 929 SMART pum_5 801 836 IPR001313 GO:0003723
Apr9g2568 929 SMART pum_5 765 800 IPR001313 GO:0003723
Apr9g2568 929 SMART pum_5 620 655 IPR001313 GO:0003723
Apr9g2568 929 SMART pum_5 843 878 IPR001313 GO:0003723
Apr9g2568 929 ProSiteProfiles Pumilio RNA-binding repeat profile. 656 692 IPR001313 GO:0003723
Apr9g2568 929 ProSiteProfiles Pumilio RNA-binding repeat profile. 837 878 IPR001313 GO:0003723
Apr9g2568 929 PANTHER PUMILIO HOMOLOG 6, CHLOROPLASTIC 53 903 - -
Apr9g2568 929 ProSiteProfiles Pumilio RNA-binding repeat profile. 765 800 IPR001313 GO:0003723
Apr9g2568 929 Pfam Pumilio-family RNA binding repeat 847 878 IPR001313 GO:0003723
Apr9g2568 929 Pfam Pumilio-family RNA binding repeat 770 802 IPR001313 GO:0003723
Apr9g2568 929 Pfam Pumilio-family RNA binding repeat 805 838 IPR001313 GO:0003723
Apr9g2568 929 Pfam Pumilio-family RNA binding repeat 627 656 IPR001313 GO:0003723
Apr9g2568 929 Pfam Pumilio-family RNA binding repeat 702 720 IPR001313 GO:0003723
Apr9g2568 929 Pfam Pumilio-family RNA binding repeat 588 622 IPR001313 GO:0003723
Apr9g2568 929 Pfam Pumilio-family RNA binding repeat 732 767 IPR001313 GO:0003723
Apr9g2568 929 Pfam Pumilio-family RNA binding repeat 660 693 IPR001313 GO:0003723
Apr9g2568 929 ProSiteProfiles Pumilio RNA-binding repeat profile. 620 655 IPR001313 GO:0003723
Apr9g2568 929 SUPERFAMILY ARM repeat 579 900 IPR016024 -
Apr9g2568 929 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 53 903 - -
Apr9g2568 929 ProSiteProfiles Pumilio RNA-binding repeat profile. 728 764 IPR001313 GO:0003723
Apr9g2568 929 ProSiteProfiles Pumilio RNA-binding repeat profile. 584 619 IPR001313 GO:0003723
Apr9g2568 929 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 564 904 IPR033133 GO:0003723
Apr9g2568 929 Gene3D - 566 905 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2568 Apr-Chr9 32881148 32890928 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2568 K17943 - gmx:100819166 1458.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2568 9 32881148 32890928 Apr1g2307 1 32634744 32651622 PCT