Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2307 ATGGCAACTGAGAGTCCAATTAGAATCTCAGAAGCTGGGGGTAAATGGCCGTCTCTTAAGGAAGCAGCAGCTTTTGGTCCACCATCTCATTCTGTGGTGACAGAGGATTTGGGTTTATTTCTGAAGGGCCATAGGCTCCATGGTGGTGGAAAGGATGTGGCACCCAGTCGCAGTGGCAGTGCACCTCCCAGCATGGAAGGTTCATATCTGGCCATAGAAAACCTCTTACCCCTGCAGAACACCACCCAGAACGCAAGCTTGGCCACTCTAAGCAGAGCTATGCAAACATGTGAGTCTGAAGAACAATTACGAGCTGATCCGGCTTATTTGGCATATTACAGTTCCAATGTCAACCTTAACCCTAGACTTCCTCCACCACTTACATCCCGGGAAAACCACCATCTAGTGCGTCATATTGGGAGTTTTAGAAATAATTGGAGGCTGTGTTCCACAGATGATAGCGGTAAAAATTCTTTACCTTTGCCCCAAAGGACTCTTTCAACACACAAGGAGGAGTCTGAAGATGATTCATCACAACAACAGCCAAATGCTAATGAAATAGTTAAGACAAGTGGAATATGGCATAAACCAGATGCAGCTTCATTGGCATCTCAGCACAAAAATGTGGTTGATTTAATTCAGGAAGATTTTCCTCGCACCATGTCACCTGTATATAATAAGTCTCTTTCTCTAAGTCATGGACTGGTGGATAAACCAATTGATTTAGAAGCCAGTTCTAGTTCTTCCCATGACCCCCTTGTTACTGCAGTAGTGGCTGCCAAACCTACTGTAGGTGCAGATGATATAAGAGTATCATCAAGTGTTGATACCCATGCCCCTGTTGCAAGCTCATCATCTCTTGAATCCACAGGCAGCATTGGTGTTAGTGACTTGGACATTGCAACTGTTGATTCTCAACTAAATGCTCTTTGTGTATCTAATCTACCAAATTCAGAAAACTTGAGTTACGAAGAAAAATGGAAGACCAACTACCAGAATAATTTGATGCAACGCCAGGTATTCCAGCAGCAAAACAATACGTCTGAAGTTCCCAATGCCAATTATCAAAGTGTAAATTCTTTGTACGTTGGTAGGGAACAGTTTCCTTATAATTCCAGCAAATTTTCTGATGTCCAGCCCCTGTTGCAATCATCTGGGTTTACACCTCCCCTATATGCCACAGCAGCAGCTTATATGACTTCAGCAAATCCACTTTACACTAATATGCAGGCCTCAGGTATATATACTCCACAATATGTTGGTGGGTACACTTTAAATCCCACAACTATTCCTCCATATATGGCTGCATACCCTCCTCATGGTGCTGTACCACTTGTTGTTGATGGGGCTACTAGTTCCAGTTATAGTCCACTAACACCAGGGGTTTCAACTGGGGGAAGCATTTCGCATGGAGCTGAAATGGTACAGACAAACAAGTACCCTGGGCAATTTGGATTTCCACTGCAGCCTTCTTTTGGTGATACTATGTACATGCAATATCATCAGCAACCTTTTGTGGAGGGATATGGTTTTTCTGGTCATTTTGATCCAGTGGCACCTAGAGAAAGTGGTGGGAGCCATATTAGTCCTTATGATTCACAGAGAAGGCCAAGTACCGGTGCTTATTTGGATGAGAAAAAATTACATGATCAGAGAACTGGTGCCAATGTGACCTCAAGAAGAGGTGGATTATTGATTCCTAGTTATTTTGGACACATGCCCAATATGGGTTTTGTGATGCAGTATCCGAGTTCACCACTTGCTAGTCCAGTTTTATCAGGATACCCAGATGGAAGTCCTGGCCAACCAGGAGTTAGGAATGAAATGAAACTTTCCCCAGCTTCTGGTAGAAATGGAGGCATAATATCTGGATGGCAAGGTCAGAGATTGTTTGACAGAGCTCATGACCCCAAAATTGTTAATTTTCTTGAAGACTTAAAATCTGGCAAAGGTCGAAGATTTGAGTTATCTGATATTATTGGACATATTGTTGAATTTAGTGCTGATCAGCATGGAAGTCGGTTTATACAGCAGAAGTTGGAAAGTTGTGGTGTTGAAGAGAAGGCTTTGGTGTTCAAAGAGGTTCTTCCACATGCTTCTAAGTTAATGACTGATGTATTTGGTAACTACGTAATACAAAAGTTTTTCGAGTATGGAGGCCCTGAGCAGAGGAGGGAACTTGCAGATCGACTGTCTGGTCAGATACTGCCGTTAAGTCTTCAAATGTATGGTTGTCGTGTAATCCAGAAGGCACTTGAGGTTATTGAGCTTGAACAGAAAGCTCAGCTTGTTCGTGAACTAGATGGACATGTTCTGAGATGTGTTCGTGACCAAAATGGAAACCATGTAATACAAAAGTGCATTGAATCTATTCCAACCAAAAAAATTGGCTTTATACTATCTGCATTTTGTGGTCAAGTTGCTATTCTATCAAAGCATCCCTATGGTTGCCGTGTCATACAGAGAGTTCTAGAGCATTGCACAGATGAGAGTCAATGTCAGTTTATTGTGGATGAAATATTGGAATCAGTTTGTGCTCTTGCTGAGGACCAGTATGGTAATTATGTTACCCAGCATGTCTTGGAGAGAGGAAAGCCTCAGGAAAGGAGCCAAATTATTAGCAAACTTTCAGGACATATTGTTCAATTAAGCCAGCATAAGTTTGCTTCAAATGTTGTAGAGAAATGTTTGGAGTATGGTGATGCTACTGAACGGGAGTTGTTAATTGCAGAGATACTTGGGCATGATGAACAAAATGATAATCTATTGACAATGATGAAAGACCAATTTGCGAATTATGTGGTCCAGAAGGTTATTGATATCTGTTCTGAAAATCAGCGAGCAATGTTGCTTTCTCACATAAGAGTTCATGGTCATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGGCTGGAACATCAATTTGGAGGTATTAGATTGTACCTGATGAATGTACAACATGCAGAAGTGGACTATTTATTTGTAGGGAAGCCTGCCCAATCAGCTTCTCAGTATCCCTATCCTCAGAGAGTCAAATACCCGGGTCATGATGAGCCTGAGAGGAAACCATGGGTCGTCAGCAGTGCTGCTGTGGCATGCAAACCCCACAGCTTCAACATATGTTCTATTGATTACTGGAAATAG 3153 0.4212 MATESPIRISEAGGKWPSLKEAAAFGPPSHSVVTEDLGLFLKGHRLHGGGKDVAPSRSGSAPPSMEGSYLAIENLLPLQNTTQNASLATLSRAMQTCESEEQLRADPAYLAYYSSNVNLNPRLPPPLTSRENHHLVRHIGSFRNNWRLCSTDDSGKNSLPLPQRTLSTHKEESEDDSSQQQPNANEIVKTSGIWHKPDAASLASQHKNVVDLIQEDFPRTMSPVYNKSLSLSHGLVDKPIDLEASSSSSHDPLVTAVVAAKPTVGADDIRVSSSVDTHAPVASSSSLESTGSIGVSDLDIATVDSQLNALCVSNLPNSENLSYEEKWKTNYQNNLMQRQVFQQQNNTSEVPNANYQSVNSLYVGREQFPYNSSKFSDVQPLLQSSGFTPPLYATAAAYMTSANPLYTNMQASGIYTPQYVGGYTLNPTTIPPYMAAYPPHGAVPLVVDGATSSSYSPLTPGVSTGGSISHGAEMVQTNKYPGQFGFPLQPSFGDTMYMQYHQQPFVEGYGFSGHFDPVAPRESGGSHISPYDSQRRPSTGAYLDEKKLHDQRTGANVTSRRGGLLIPSYFGHMPNMGFVMQYPSSPLASPVLSGYPDGSPGQPGVRNEMKLSPASGRNGGIISGWQGQRLFDRAHDPKIVNFLEDLKSGKGRRFELSDIIGHIVEFSADQHGSRFIQQKLESCGVEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGGPEQRRELADRLSGQILPLSLQMYGCRVIQKALEVIELEQKAQLVRELDGHVLRCVRDQNGNHVIQKCIESIPTKKIGFILSAFCGQVAILSKHPYGCRVIQRVLEHCTDESQCQFIVDEILESVCALAEDQYGNYVTQHVLERGKPQERSQIISKLSGHIVQLSQHKFASNVVEKCLEYGDATERELLIAEILGHDEQNDNLLTMMKDQFANYVVQKVIDICSENQRAMLLSHIRVHGHALKKYTYGKHIVARLEHQFGGIRLYLMNVQHAEVDYLFVGKPAQSASQYPYPQRVKYPGHDEPERKPWVVSSAAVACKPHSFNICSIDYWK* 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2307 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 911 952 IPR001313 GO:0003723
Apr1g2307 1050 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 638 978 IPR033133 GO:0003723
Apr1g2307 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 839 874 IPR001313 GO:0003723
Apr1g2307 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 658 693 IPR001313 GO:0003723
Apr1g2307 1050 MobiDBLite consensus disorder prediction 152 183 - -
Apr1g2307 1050 CDD Pumilio 653 974 IPR033712 GO:0003723
Apr1g2307 1050 SUPERFAMILY ARM repeat 642 975 IPR016024 -
Apr1g2307 1050 MobiDBLite consensus disorder prediction 152 166 - -
Apr1g2307 1050 Pfam Pumilio-family RNA binding repeat 734 767 IPR001313 GO:0003723
Apr1g2307 1050 Pfam Pumilio-family RNA binding repeat 844 876 IPR001313 GO:0003723
Apr1g2307 1050 Pfam Pumilio-family RNA binding repeat 921 954 IPR001313 GO:0003723
Apr1g2307 1050 Pfam Pumilio-family RNA binding repeat 879 913 IPR001313 GO:0003723
Apr1g2307 1050 Pfam Pumilio-family RNA binding repeat 772 792 IPR001313 GO:0003723
Apr1g2307 1050 Pfam Pumilio-family RNA binding repeat 806 841 IPR001313 GO:0003723
Apr1g2307 1050 Pfam Pumilio-family RNA binding repeat 699 730 IPR001313 GO:0003723
Apr1g2307 1050 Pfam Pumilio-family RNA binding repeat 662 696 IPR001313 GO:0003723
Apr1g2307 1050 Gene3D - 639 978 IPR011989 -
Apr1g2307 1050 PANTHER PUMILIO HOMOLOG 5 45 980 - -
Apr1g2307 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 694 729 IPR001313 GO:0003723
Apr1g2307 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 802 838 IPR001313 GO:0003723
Apr1g2307 1050 SMART pum_5 730 765 IPR001313 GO:0003723
Apr1g2307 1050 SMART pum_5 875 910 IPR001313 GO:0003723
Apr1g2307 1050 SMART pum_5 694 729 IPR001313 GO:0003723
Apr1g2307 1050 SMART pum_5 766 801 IPR001313 GO:0003723
Apr1g2307 1050 SMART pum_5 802 838 IPR001313 GO:0003723
Apr1g2307 1050 SMART pum_5 839 874 IPR001313 GO:0003723
Apr1g2307 1050 SMART pum_5 917 952 IPR001313 GO:0003723
Apr1g2307 1050 SMART pum_5 658 693 IPR001313 GO:0003723
Apr1g2307 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 766 801 IPR001313 GO:0003723
Apr1g2307 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 730 765 IPR001313 GO:0003723
Apr1g2307 1050 ProSiteProfiles Pumilio RNA-binding repeat profile. 875 910 IPR001313 GO:0003723
Apr1g2307 1050 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 45 980 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2307 Apr-Chr1 32634744 32651622 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2307 K17943 - gmx:100811036 1684.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2568 9 32881148 32890928 Apr1g2307 1 32634744 32651622 PCT