LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr9g2558	ATGCCGCCGGCTCTGATGGACCCTCCATTCCCGGAATCGTCGTCGGTGCCGTCTTTAAGCTCCGACACCGTTTCTCAGGGATCGGCACCGGAGAGTCGGCGATTCGTGGATCTTAGAGGTTTGCAGTGGCGTATAAATCTTGGGGTGTTACCGTCTTCTTCTTCCATTGATGATCTTCGTCGTGCCACCGCCAATTCGAGAAGGAGAGGACGCCTCCTGGTTGATCCGCATCTTCCCAAGGATGGAAGTGGTTCACCTGATCTTGTCATGGACAACCCACTTTCACAAAATCCAGACAGTACATGGAGTCGCTATTTTCGGAATGCGGAGCTGGAGAGGATGGTTGATCAGGACTTATCACGTTTATATCCAGAACATGGCAACTATTTTCAGACACCAGGATGCCAAGGCATATTGAGACGAATTTTATTACTATGGTGTCTCAGACACCCAGAATGTGGTTATAGACAAGGAATGCATGAATTACTTGCTCCGGTGCTTTATGTTCTCCAAGTTGATGTGGAACGTCTTTCTGAAGTCCGAAAGCTTTATGAAGATCACTTCACAGACAGATTTGACGATCTCTTTTTTCAAGAGAATGATCTCTCTTACAGCTTTGATTTTAGAAAATCTTCAGACTTAATGGAGGATGAAATTGGCTCTAATGGAAATGCAACGAAAATGAAGAGTCTTGATGAACTTGATCCTGAGATACAGACCATTGTATTGCTAAGTGATGCTTACGGGGCTGAAGGTGAACTGGGCGTTGTTTTATCTGAGAAATTCATCGAACATGATGCATACTGCATGTTTGATGCTTTAATGAATGGTGCTCGTGGTTCAGTTGCAATGGCCGATTTCTTCTCTTATTCACCTGTACATGGGTCTCATACTGGCTTGCCTCCTGTAATTGAAGCTTCTGCTGCATTGTATCATTTGTTGTCTCATGTGGATTCATCTCTGCATAGCCATCTTGTTGAGCTTGGAGTTGAACCCCAATACTTTGCTCTCCGCTGGTTGCGAGTTTTATTTGGACGGGAATTTTCACTAGGCAACCTCTTGATAATCTGGGATGAAATCTTTCTATCAGATAATAGTAAAATGGATAAACACATCGAGGATAACACAGACTCTGGTTTTAGGATCTTTCAATCCTCTCGTGGAGCATTCATCACAGCTATGGCTGTGGCGATGATACTTCGTTTAAGATCTTCACTGCTTGCAACTGAAAATCCAACAATCTGTCTCCAGAGATTATTAAACTTCCCTGAGGACACTGACATTAAAAAACTAATAGAGAAGGCTAAATCCTTGCAGGCTCTTGCATTAAGTACTGACATTTCATCTTCAATGCCTTCATTTGTGGATTATTATCATAACCAGGGTAAATCAATTATTGCTAAATCTCACACTTCTGAATCAGCTTCACCAAAAAATCCTCTGAAATTGTTACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTTGTCCATAGTTCTAAAGAACATAAGCAAGATGGAGTAGAAAAAGAGGTTCCAACTAGGAAGAAGGGATGGACAGAAAAAGTGAAATTCAGTTTGAGAAGAACAGAATCTGACCCTTCATCAAGGATTAAGAGTGGTAAAAAGGAATCTAAGTCAACTGTTAGGCGCAATTTGTTAGAAGATCTTTCTAAGGAACTTGGCTTTGAGGAAGATACAGAAACGCGGCACTGTCATGAAATCTTGCGCCAACAGGATAATCTTTCTACAGCAGTCCAAGAGGAGCATCGAGATGATGTCTCTGAAGGCAGCAACTGCTACTCTTCCGAGGATAGATGTCTAAGTCGAAACATCAGTGAGGATAACTCACCTATAATTTCTTGCCCTGCTAGTCCTCCTAACGAGGCCAATTATCCTGAAAACGACTCGCAGAAGAGCAGTGTTGGGTCTAATTTATCCCTTGATGAAATTCATGAAACTTCACATAGTAGTCCCATTGATTCACCTGTTCCAACATCTGATCATCCCAAGAACGAATCTCGGATATCAGGGTCCCATAATATCAATAATTCTACACGAAACTCAACCACACATTCTGACAGAAAACTGAATAAATTCCAGTGGCTTTGGAAATTTGGGCAGAACAATGGCGAGTTTATGTCAGACAAAGGAGAAGATTCTTCTGAGGCTGTAAAACCTGCCAACAACAGTAACAATCAAAATAATACAATCCCCTCTTCTACAGCTAATGGACATTGTAGTTCTGTTTATTGCAAAGGGGATTCTACAGAGCAGAATGTGATGGACAGTTTGCGGAATCTTGGGCAGTCTATGCTTGAGCATATTCAGGTGATCGAGTGTGCTTTCCAACAAGAGCCGGGAGAAGGAGCATTATCAGTGGATAACATGTCAAAGAATCCTGTGATTGGTAAAGAGGAGGTTACTGCCATATCAGCTCTGGAGGAGCTCCGCAGAATTAGCAATCTTTTGTCTGAGATGTGA	2481	0.4236	MPPALMDPPFPESSSVPSLSSDTVSQGSAPESRRFVDLRGLQWRINLGVLPSSSSIDDLRRATANSRRRGRLLVDPHLPKDGSGSPDLVMDNPLSQNPDSTWSRYFRNAELERMVDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCLRHPECGYRQGMHELLAPVLYVLQVDVERLSEVRKLYEDHFTDRFDDLFFQENDLSYSFDFRKSSDLMEDEIGSNGNATKMKSLDELDPEIQTIVLLSDAYGAEGELGVVLSEKFIEHDAYCMFDALMNGARGSVAMADFFSYSPVHGSHTGLPPVIEASAALYHLLSHVDSSLHSHLVELGVEPQYFALRWLRVLFGREFSLGNLLIIWDEIFLSDNSKMDKHIEDNTDSGFRIFQSSRGAFITAMAVAMILRLRSSLLATENPTICLQRLLNFPEDTDIKKLIEKAKSLQALALSTDISSSMPSFVDYYHNQGKSIIAKSHTSESASPKNPLKLLPDSYWEEKWRVVHSSKEHKQDGVEKEVPTRKKGWTEKVKFSLRRTESDPSSRIKSGKKESKSTVRRNLLEDLSKELGFEEDTETRHCHEILRQQDNLSTAVQEEHRDDVSEGSNCYSSEDRCLSRNISEDNSPIISCPASPPNEANYPENDSQKSSVGSNLSLDEIHETSHSSPIDSPVPTSDHPKNESRISGSHNINNSTRNSTTHSDRKLNKFQWLWKFGQNNGEFMSDKGEDSSEAVKPANNSNNQNNTIPSSTANGHCSSVYCKGDSTEQNVMDSLRNLGQSMLEHIQVIECAFQQEPGEGALSVDNMSKNPVIGKEEVTAISALEELRRISNLLSEM*	827

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr9g2558	826	ProSiteProfiles	TBC/rab GAP domain profile.	33	364	IPR000195	-
	Apr9g2558	826	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	299	439	IPR035969	-
	Apr9g2558	826	MobiDBLite	consensus disorder prediction	617	693	-	-
	Apr9g2558	826	MobiDBLite	consensus disorder prediction	723	743	-	-
	Apr9g2558	826	MobiDBLite	consensus disorder prediction	524	549	-	-
	Apr9g2558	826	MobiDBLite	consensus disorder prediction	579	602	-	-
	Apr9g2558	826	Pfam	Rab-GTPase-TBC domain	111	173	IPR000195	-
	Apr9g2558	826	Pfam	Rab-GTPase-TBC domain	264	365	IPR000195	-
	Apr9g2558	826	Gene3D	putative rabgap domain of human tbc1 domain family member 14 like domains	95	280	-	-
	Apr9g2558	826	SMART	tbc_4	24	410	IPR000195	-
	Apr9g2558	826	MobiDBLite	consensus disorder prediction	13	30	-	-
	Apr9g2558	826	PANTHER	YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN	2	767	-	-
	Apr9g2558	826	MobiDBLite	consensus disorder prediction	712	743	-	-
	Apr9g2558	826	Gene3D	-	303	446	-	-
	Apr9g2558	826	MobiDBLite	consensus disorder prediction	583	598	-	-
	Apr9g2558	826	MobiDBLite	consensus disorder prediction	1	31	-	-
	Apr9g2558	826	MobiDBLite	consensus disorder prediction	70	94	-	-
	Apr9g2558	826	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	37	324	IPR035969	-
	Apr9g2558	826	PANTHER	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	2	767	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr9g2558	Apr-Chr9	32770837	32776144	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr9g2558	K18469		-	gmx:100816501	1243.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr9g2558	9	32770837	32776144	Apr9g2558	9	32770837	32776144	ECH
	Apr9g2558	9	32770837	32776144	Apr1g2322	1	32823371	32828746	PCT