Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2322 ATGATCATGCCACCGGTTATGAAGGATCCGTTGTTGCCGTCTCCGGCGAGCGCCGACGATGCTTCTCGGCGATCAGCACCGGAGAATCGGCGATTTGGTGATCTTAGAGGCTTTCGGTGGCGTGTAAATCTTGGGGTGTTGCCGTCTTCGTCCTCAACTTCCATTGATGATCTTCGCAGGGTCACCGCTAATTCTAGAAGGAGGTATGCTAGTTTGAGAAGGCATCTTCTGGTTGAACCAAATGTTTCAAAGGATGGAACTAATTCACCCAATCTTGTCATGGACAATCCCCTTTCACAAAATCCAGATAGTACATGGAGTCGCTTTTTTCGCAACGTAGAGCTGGAGAGAATGGTTGACCAGGATTTGTCACGTTTATATCCAGAACATGGCAGTTATTTTCAGACATCAGGATGCCAAAGCATGTTGAGACGAATTTTATTACTGTGGTGTCTCAGGCACCCAGAATCTGGTTATAGACAAGGGATGCATGAATTACTTGCACCTCTGCTTTATGTTCTCCAAGCTGATCTGGAGTGCCTTTCAGAAGTTCGGAAGCTTTATGAAAATCACTTTACAGACAGATTTGATGGCCTTTTATGTCAAGAGAATGATCTTTCTTACAGCTTTGATTTTAGAAAAACTCCAGACTCTATTGAGGATGAAATTGGTTCTGGTGGAAACGCCCTGAAAGCCAATAGTCTTGATGAACTTGATCCTGAGATACAGACCATTGTATTACTAAGTGATGCTTATGGAGCTGAAGGTGAGCTAGGCATTGTTTTATCCGAGAAATTCATAGAACATGATGCATACTGTATGTTTGATGCTTTAATGAATGGGGCCCATGGTTCAGTTGCAATGGCTGATTTCTTCTCTTCCTCCCCTGTATCTGGGTCCCATACTGGCCTGCCTCCTGTAATTGAAGCTTCTACTGCATTGTATTATTTGTTGTCTCTTGTGGATTCATCTCTGCATAGCCATCTGTTTGAACTTGGGGTTGAACCTCAGTACTTTTCTCTTCGATGGTTGCGAGTTTTATTTGGACGAGAATTTTCACTAGCTAATCTCTTGGTCATCTGGGATGAAATCTTTGCATCACATAATAGCAGAACAGAAAGAAGTGCGGATGACATAACAGACTGTGAGTTCAGGATCTTAAATTCCCCTCGCGGGGCATTTATCTCAGCTATGGCAGTGGCAATGTTGCTTCATTTAAGATCTTCGTTACTTGCTACTGAAAACCCTACAAAGTGTCTGCAGAGATTACTAAACTTCCCTGAAAACATTAATATTGAAAAACTACTAGAGAAGGCTAAATCCTTGCAGGCTGTTGCACTAAGTGTTGATATTTCATCCTCGTCACTTTTGTTCATAGGGTCTCATCACCAGTCGATGTTTACTAGATCTGTGACACTTCCCTCGGAATCTGTGTCTCCAAAAACTCCTCTGAGTTTGTTACCTGAAAGCTATTGGGAAGAAAAGTGGAGAGTTGTGCATGAGGCTGAAGAACTCAAGCAAGATGGTAATGAAAAGCAGATTCCCACTCGGAAAAAGGGATGGACAGAAAAGGTAAAATTCAGTTTAAGAAGAGCAGAATCTGACCCTCCTAAGTCAAGGATTCAGAGTGGGAAAAAGGAATCCAAGGTTAGGCGCAGTTTGTTAGAAGATCTTCGTAAGGCACTTGGCTCAGAGGAAGATGCAGAACAAATGCAGCATGATAATCTTTCTGAAACAGTTGAAGGACAACGACAAGATAGTGACTGTAACAGCAACAACAATTCCTCTTCTTATGATAGGTGTCCAAGTGGAAATTCTGGCAGTGAGGAAGACTTGTCTATGTTTTCTGACCCTACTACTCCTCCAAATGGGGCCAATGATCATGAAATTACCTCAGGGAAAAGCAGTGTTGCATCTAATGCACCCCTTGATGAATGCAATGAAGCTTCAGGTACCAGTTCGCCCCTTCCAATATCTGATCCTCCTGAAAACATGCATCAGACATCAGAATGCAATAATAATGAAGCTGGAAATTATGAATGCAATGAAACTTCAGATGCCGGTCTCAATGATCAACCTTTTCCAATCTCTGATTATTCTGAGAACATACCTCTGACATCAGGGTGCAACAATGATGATGCAGGAAATTCAGCAGCACCTCCTAAAGAGAAAAAGCAGAATAAGTTCCAGTGGTTTTGGATGTTTGGACGGAACACTGTTGAGGTTATCTCTGAGAAAGTTGGAGATGCTGCCGAGGCTACAAAATCTGCCAACAGTTGCACTCAAAATGACACAGCACAACCTGTTTCATCTAAAGCTAATGGGCATTGTAGTTCTGCTAGTACCAGAGGAGATTCTGTTGACCAGAATGTGATGGGCACTTTGAAGAATATTGGGCAATCTATGCTTGACCATATTCAGGTAATTGAATCTGTTTTCCAACAAGACCGTGGCCAGGGGCCCCCATTGGAGAACAGATCTAAAAATGTTCTTGTTGGCAAAGGGCAGGTTACTGCCATGACAGCTCTCAAGGAGCTTAGGAAAATTAGCAATCTTTTGTCTGAGATGTGA 2571 0.4271 MIMPPVMKDPLLPSPASADDASRRSAPENRRFGDLRGFRWRVNLGVLPSSSSTSIDDLRRVTANSRRRYASLRRHLLVEPNVSKDGTNSPNLVMDNPLSQNPDSTWSRFFRNVELERMVDQDLSRLYPEHGSYFQTSGCQSMLRRILLLWCLRHPESGYRQGMHELLAPLLYVLQADLECLSEVRKLYENHFTDRFDGLLCQENDLSYSFDFRKTPDSIEDEIGSGGNALKANSLDELDPEIQTIVLLSDAYGAEGELGIVLSEKFIEHDAYCMFDALMNGAHGSVAMADFFSSSPVSGSHTGLPPVIEASTALYYLLSLVDSSLHSHLFELGVEPQYFSLRWLRVLFGREFSLANLLVIWDEIFASHNSRTERSADDITDCEFRILNSPRGAFISAMAVAMLLHLRSSLLATENPTKCLQRLLNFPENINIEKLLEKAKSLQAVALSVDISSSSLLFIGSHHQSMFTRSVTLPSESVSPKTPLSLLPESYWEEKWRVVHEAEELKQDGNEKQIPTRKKGWTEKVKFSLRRAESDPPKSRIQSGKKESKVRRSLLEDLRKALGSEEDAEQMQHDNLSETVEGQRQDSDCNSNNNSSSYDRCPSGNSGSEEDLSMFSDPTTPPNGANDHEITSGKSSVASNAPLDECNEASGTSSPLPISDPPENMHQTSECNNNEAGNYECNETSDAGLNDQPFPISDYSENIPLTSGCNNDDAGNSAAPPKEKKQNKFQWFWMFGRNTVEVISEKVGDAAEATKSANSCTQNDTAQPVSSKANGHCSSASTRGDSVDQNVMGTLKNIGQSMLDHIQVIESVFQQDRGQGPPLENRSKNVLVGKGQVTAMTALKELRKISNLLSEM* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2322 856 Pfam Rab-GTPase-TBC domain 268 368 IPR000195 -
Apr1g2322 856 Pfam Rab-GTPase-TBC domain 116 200 IPR000195 -
Apr1g2322 856 MobiDBLite consensus disorder prediction 575 714 - -
Apr1g2322 856 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 100 285 - -
Apr1g2322 856 MobiDBLite consensus disorder prediction 1 28 - -
Apr1g2322 856 MobiDBLite consensus disorder prediction 525 551 - -
Apr1g2322 856 MobiDBLite consensus disorder prediction 755 788 - -
Apr1g2322 856 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 8 780 - -
Apr1g2322 856 SMART tbc_4 22 414 IPR000195 -
Apr1g2322 856 MobiDBLite consensus disorder prediction 563 723 - -
Apr1g2322 856 Gene3D - 307 449 - -
Apr1g2322 856 ProSiteProfiles TBC/rab GAP domain profile. 30 368 IPR000195 -
Apr1g2322 856 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 34 328 IPR035969 -
Apr1g2322 856 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 304 443 IPR035969 -
Apr1g2322 856 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 8 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2322 Apr-Chr1 32823371 32828746 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2322 K18469 - gmx:100812967 1288.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2322 1 32823371 32828746 Apr1g2322 1 32823371 32828746 ECH
Apr9g2558 9 32770837 32776144 Apr1g2322 1 32823371 32828746 PCT