Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2552 ATGGCCACCGTCGACCCAATCCAGAATGGCACCGATCATTCCTCCGCCGCCGAACCACCCTCCACCACCGCTGCCTCCGACGACGCCAACCCCTCACCGGATGCCGCTGCAGCCGAGAAGAGGTGGCCCGGTTGGCCCGGCCACTGCGTTTTCCGCCTCATCGTTCCTGTCCTCAAGGTCGGTAGCATCATTGGTCGCAAGGGAGAGCTCATCAAGAAGACCTGCGAAGAGACTCGAGCTCGCATTCGCGTTCTCGACGGCGCCGTCGGCACTCCCGATCGAATCGTACTCATATCAGGGAAGGAAGAGCTGGAGGCACCTCTTTCTCCTGCAATGGATGCTGTTATAAAGGTTTTTAAACGTGTCTCGGGATTATCTGAAATTGATGGTGAGAATAAAGCATCAGGGGTTGCATTTTGTTCCATCCGTTTATTGGTGGCCTCAACGCAGGCTATCAATTTGATTGGAAAGCAGGGCTCATTAATTAAATCTATACAGGAAAATACTGGTGCTTCTGTTAGAGTATTGTCAGGAGATGAGATTCCATTTTATGCTGCTGCCGATGAGAGGATTGTAGAACTGCAGGGAGAAGCCTTGAAGGTCCTTAAGGCTCTAGAAGCTGTAGTTGGGCACCTGAGGAAGTTTTTAGTTGATCACAGTGTTCTTCCCTTATTTGAGAGAACTTACAATGCAACAATCTCCCAAGAGCGCCAAGCAGATACCTGGGTTGACAAACCATCACTGCATAGTGCTTCTCAACCTAGCATTGTTGGTGATATTCCTCTTTCAACAAAAAGGGATTCTCTCTTTGTTGACCGTGAAAGTCAATTGGATTCATTGCTCCCTCCCTCCACGATGTCACTATATGGGCAAGATTCTTCACTTTCTGGTCTTCGATCTTCGGCTATTAGTCGCCCCAGTGCTCCTATTGTTACCACGGTAATACAAACAATGCAAATACCCCTGTCCTATGCAGAGGACATCATTGGTATACAGGGGACTAACATAGATTACATTCGCCGTACTAGTGGAGCCATATTGACTGTGCAGGAGAGCAGGGTACCTGATGAAATCATTGTGGAAATAAAAGGCACCTCATCTCAGGTTCAAACAGCACAACAATTGATTCAGGAAGTTATAAGCAGTCACAAAGAATCTGTCTCTAGTAATTACAGCAGGTTAGATACAGGGCTGAGGTCTTCTTACTCTCAGTTGGGCAGTTCATCATATTCCTCATCTTCCTTGTCATCACAACCTTATAGCGGGTATGGATCTTCTGGCCTAGGAGGCTATAGTACTTTCAGACTTTGA 1311 0.4767 MATVDPIQNGTDHSSAAEPPSTTAASDDANPSPDAAAAEKRWPGWPGHCVFRLIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDGAVGTPDRIVLISGKEELEAPLSPAMDAVIKVFKRVSGLSEIDGENKASGVAFCSIRLLVASTQAINLIGKQGSLIKSIQENTGASVRVLSGDEIPFYAAADERIVELQGEALKVLKALEAVVGHLRKFLVDHSVLPLFERTYNATISQERQADTWVDKPSLHSASQPSIVGDIPLSTKRDSLFVDRESQLDSLLPPSTMSLYGQDSSLSGLRSSAISRPSAPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVISSHKESVSSNYSRLDTGLRSSYSQLGSSSYSSSSLSSQPYSGYGSSGLGGYSTFRL* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2552 436 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 36 425 - -
Apr9g2552 436 Gene3D K Homology domain, type 1 311 387 IPR036612 GO:0003723
Apr9g2552 436 Gene3D K Homology domain, type 1 140 215 IPR036612 GO:0003723
Apr9g2552 436 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 42 103 IPR036612 GO:0003723
Apr9g2552 436 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 36 425 - -
Apr9g2552 436 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 135 220 IPR036612 GO:0003723
Apr9g2552 436 CDD PCBP_like_KH 141 209 - -
Apr9g2552 436 ProSiteProfiles Type-1 KH domain profile. 313 376 - -
Apr9g2552 436 Gene3D K Homology domain, type 1 48 123 IPR036612 GO:0003723
Apr9g2552 436 ProSiteProfiles Type-1 KH domain profile. 139 208 - -
Apr9g2552 436 MobiDBLite consensus disorder prediction 1 41 - -
Apr9g2552 436 ProSiteProfiles Type-1 KH domain profile. 48 115 - -
Apr9g2552 436 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 309 382 IPR036612 GO:0003723
Apr9g2552 436 Pfam KH domain 142 208 IPR004088 GO:0003723
Apr9g2552 436 Pfam KH domain 316 378 IPR004088 GO:0003723
Apr9g2552 436 Pfam KH domain 51 103 IPR004088 GO:0003723
Apr9g2552 436 SMART kh_6 47 120 IPR004087 GO:0003676
Apr9g2552 436 SMART kh_6 312 381 IPR004087 GO:0003676
Apr9g2552 436 SMART kh_6 138 213 IPR004087 GO:0003676
Apr9g2552 436 CDD KH-I 315 377 - -
Apr9g2552 436 CDD PCBP_like_KH 50 119 - -
Apr9g2552 436 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2552 Apr-Chr9 32731357 32737064 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2552 K21444 - gmx:100802089 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2552 9 32731357 32737064 Apr9g2552 9 32731357 32737064 ECH
Apr9g2552 9 32731357 32737064 Apr1g2328 1 32866787 32873790 PCT