Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2328 ATGGCCACTGCCGAACCTCTCCCACCGGAAAATGCCTCCGCCGCCGCCCAAGCACACCACCACCCTGACACTGAAGCCAACGGCGGAGCTGCGGGGCCTACTCCGCCGGAGAAGAGATGGCCGGGTTGGCCCGGGGACTGCGTGTTCCGACTGGTGGTGCCGGTGGGGAAGGTTGGAAGCATCATTGGCCGAAAGGGGGAACTCATCAAGAAGATGTGCGAAGAGACTCGAGCTCGCATTCGTGTTCTCGACGCTGCTATTGGTACTCCCGATCGAATCGTTCTTGTATCAGGAAAGGAAGAGCCAGAGGCGGCTCTTTCCCCTGCGATGGAAGCTGTAATTAGGGTATTCAAGCGTGTCTCTGGATTATCTGAAACCGATGCTGAGAATAAAGAATCTGCTGCTGGGCTTACATTTTGTTCCATCCGTTTACTGGTGGCATCAACACAGGCGATAAATTTAATTGGAAAGCAAGGCTCATTAATCAAATCTATTCAGGAGAACACCGGCGCTGCTGTTAGAGTACTGTCTGGAGATGAGGTGCAATTTTATGCTTCCACGGATGAGAGGATTGTGGAAATGCAGGGAGAAGCCTTGAAGGTCCTTAAAGCACTGGAAGCAGTAGTTAGCCATCTAAGGAAATTTTTGGTTGATCACAGCGTTCTTCCCCTGTTTGAGAAAAGTTACAATGCACCAATCTTGCAAGATCGTCAAGCAGAGACCTGGTCTGACAAGTCATTGTTGCATACTAATTCACAAACTAGCATTTTTGCTGATATTCCTCTTCCAACAAAAAGGGATTCTGTCTTAACTGACCGGGAAAGTCAATTGGACTCGTTATTCCCTTCATCCACTGTGTCTCTCTATGGGCAAGATTCTTCACTTTCTAGTGTCTCTTCTTCAGCTCTTGGCCGTGTTGGTGCTCCTATTGTTACTACGGTAATACAAACAATGCAAATACCATTATCCTATGCTGAGGACATCATTGGTATTCAAGGTACTAATATTGATTACATTCGCCGCACCAGTGGAGCCATATTGACTGTGCAGGAGAGTAGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACTTCATCTCAGGTTCAAACGGCACAACAACTGATTCAGGAAGTTATAAGCAATCACAAAGAACCTGTTACTAGCAGTTATGGCAGGTTAGATGCAGGTCTGCGGTCTTCATACTCTCAGTTGGGCACTTCATCACGCTTTTCATCTTCCTTGTCCTCCCAACCGTACGCAGGTTATGGAGCTTCTGGTTTAGGAGACTACAGTACTTTCAGGCTTTGA 1311 0.476 MATAEPLPPENASAAAQAHHHPDTEANGGAAGPTPPEKRWPGWPGDCVFRLVVPVGKVGSIIGRKGELIKKMCEETRARIRVLDAAIGTPDRIVLVSGKEEPEAALSPAMEAVIRVFKRVSGLSETDAENKESAAGLTFCSIRLLVASTQAINLIGKQGSLIKSIQENTGAAVRVLSGDEVQFYASTDERIVEMQGEALKVLKALEAVVSHLRKFLVDHSVLPLFEKSYNAPILQDRQAETWSDKSLLHTNSQTSIFADIPLPTKRDSVLTDRESQLDSLFPSSTVSLYGQDSSLSSVSSSALGRVGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVISNHKEPVTSSYGRLDAGLRSSYSQLGTSSRFSSSLSSQPYAGYGASGLGDYSTFRL* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2328 436 MobiDBLite consensus disorder prediction 1 40 - -
Apr1g2328 436 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 309 382 IPR036612 GO:0003723
Apr1g2328 436 ProSiteProfiles Type-1 KH domain profile. 139 208 - -
Apr1g2328 436 SMART kh_6 138 213 IPR004087 GO:0003676
Apr1g2328 436 SMART kh_6 45 118 IPR004087 GO:0003676
Apr1g2328 436 SMART kh_6 312 381 IPR004087 GO:0003676
Apr1g2328 436 CDD PCBP_like_KH 141 209 - -
Apr1g2328 436 ProSiteProfiles Type-1 KH domain profile. 313 376 - -
Apr1g2328 436 CDD PCBP_like_KH 48 117 - -
Apr1g2328 436 Gene3D K Homology domain, type 1 311 386 IPR036612 GO:0003723
Apr1g2328 436 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 39 101 IPR036612 GO:0003723
Apr1g2328 436 ProSiteProfiles Type-1 KH domain profile. 46 113 - -
Apr1g2328 436 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 35 424 - -
Apr1g2328 436 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 137 219 IPR036612 GO:0003723
Apr1g2328 436 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 35 424 - -
Apr1g2328 436 CDD KH-I 315 377 - -
Apr1g2328 436 Pfam KH domain 49 102 IPR004088 GO:0003723
Apr1g2328 436 Pfam KH domain 316 378 IPR004088 GO:0003723
Apr1g2328 436 Pfam KH domain 142 208 IPR004088 GO:0003723
Apr1g2328 436 Gene3D - 46 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2328 Apr-Chr1 32866787 32873790 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2328 K21444 - gmx:100815466 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2328 1 32866787 32873790 Apr1g2328 1 32866787 32873790 ECH
Apr9g2552 9 32731357 32737064 Apr1g2328 1 32866787 32873790 PCT