Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2547 ATGCGCTCAGGTGTTTGTGCATTACAGCAGACCCTCACAGCTGAGGCTGCTTCAGTGTTGAAGCACTCTCTGGGGTTGGCTCGTAGGAGGGGCCATGCACAGGTCACTCCTTTGCATGTGGCTGCAACTTTGCTCAGCCTAAGAGCCAGTTCTTTGAGAAGGGCTTGTTTCAAATCTCAGCCTCACCAAACTTCACATCCTCTTCAATGCAGAGCTCTTGAACTGTGTTTCAATGTGGCTCTCAATAGACTCCCAACAACACCTTCTCCTTTGATCCACACTCAGCCTTCTCTTTCCAACGCTCTCATTGCTGCACTCAAAAGAGCACAGGCTCATCAGAGAAGAGGATGCATAGAGCAACAGCAACAACAGCCTCTTCTTACTGTCAAAGTTGACTTGGAACAGCTCATCATATCCATTCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAGGCTGGATTCTCTAGCACTGCTGTTAAGAACAATATAGAGGACTCTTCAGCTCCTTTTCAGTGTTACAACAGTTCTGGTGGTGTATTTTCTTCTCCTTGTTCACCTTCTTCTAGCGAGAACCATAGGGAAACAACCATCAACCGTACCAGTTTCAGGCACACTCATCATCATTTCTTAGCTGCTTATACTTCTGAGTTCAACCCTGCAGTTCTCTTTTCTCCACCAAAGAATGCTCCTTTGTGTCCCACATCAGGTGGACTTGGCTTAAGCCTTCATGCTTCCAGTTTCCTTGATTCAAAGATGACCATCTACCAGAGCCCATCTCATATGCTGGAAACAAAGCCTTTGAGTAACAAGGAGCATCTGGATAAGCTCAATTGCTGTGAAGAATGTGCCCCAAATTATGAAAAAGAAGCCCAACTTCTCAAATCAGACCAGAAGAAAATGTTGCCTTTCTGGCTTAAGTCTCATACCACAGAAGACCATAAGAAGGATGAATTAACCCATTTGAAAATAAAATGGAATAGACTATGCCACAGTCTCCACCAAAGCAAACAGCCTCAGAACCAATGGAACTGGAACACCAGTAATAATTCATCAAGTTCTATATCCTTTGCCAACAATGCCACCTACAACTCCACCTCCAATCTTGTCCCTCGATTCAGGCGTCAACAATCATGCGCCATTGAGTTCAATTTCAGCGACAAATGGGAAGCAACAGAGCCAATCTTGGGTTCTCTTGTGAGCATGGAAGGTAAAGAAGTAAAGACTACTCTTGCTCTTGGAAATGGTGGTTCAGGTGAAACGGTGGGGAATATAACTGATAGAACACTGCAACGAGCTCATATTTGTAAACTGTTGCAGGAGAATGTGCCATGGCAGTTTGAGACTGTTCCTTCGGTGGCTGAGGCCTTGATTAATTCCAAATCAGCAAAGCAAAGTAACATTACTTGGTTATCTGTGCAAGGCAATGACATCATTGGCAAAAGAAGGTTGGCACTTGCAGTTGCAGAATCAGTTTTTGGCTCAACTGATGTGTTCCTTCACTTGGACATGCTTAAGAAAGAGACTTCAATAGCCCCATTTCCTGAAATGTTGGCGGGAGCAATGAAAACCCACCAAAAGCTTGTGGTGCTAATAGAAAATGTTGACTTTGCTGATGCCCAATTCAAGAAATTCCTATCAGATGGATTTGAAACAGGAAAGTTTGGAAATTTAAGTAGCATGGAAGAGAACTCAAGGCATGCAATATTCATGTTGACAAGTGGGGGATCCACTAGCATTGAGGAGCAGAATCAGGAATTGGTTATGAAGTTGTTGTGGCAAGTAAGTGAAACCAAGCCAAATTTAGAGACACCTTGCTTAGGCCACAAGCAAAAGGCTGAACTAGATTTGTTTTCCAACATCAAGAGGCCAAGAATTGAAGAGAATCAAGAGGCATTGTTGGTTTCTTCAAAGCAAAAGAAAGAGTTTTCAAGACAGTCAAGCTTCAACACCCTTGATCTGAATATGAAAGCTGATGAAGAGGGTGATGGGTTGGATAAAGCAGGGGAAAGTAGTCCCATTTCAAGTGATTTGACTAGAGAAACTATAGCTGATCCACTGAACCCAAATGGGTTTCTTGACTCAATTGAGAACCGGTTTGAGTTGAATACAAGTCCAGCTAGGGAGAGGGAGATGAAAGAGTTGTTTTTATCTAAGATTAAGGGGTCTTTTGAAGACGTTTATGGGAAGCCATATTTGATGAATTTAAGTGTAGATGAGAGGGTGATTGAGGATGTGTGTGTTGGGTGTGGTTCTTTTACTAACAGCATGTTTGAGAAATGGCTAAGAGACATTTTTCAAAGCAGCTTACAAACGGTTAACTTTGGAGGGAAGGAGGGTATACTTTTTAGACTTTCTTGGGGTGGTAAAGGACATAGAAAATCAGATAGTGGGTTCATTGGTTCTTCTCTGCCCAAGAGTATCCAAGTTAATTACTTCATAGAGTGA 2448 0.4281 MRSGVCALQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRASSLRRACFKSQPHQTSHPLQCRALELCFNVALNRLPTTPSPLIHTQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTVKVDLEQLIISILDDPSVSRVMREAGFSSTAVKNNIEDSSAPFQCYNSSGGVFSSPCSPSSSENHRETTINRTSFRHTHHHFLAAYTSEFNPAVLFSPPKNAPLCPTSGGLGLSLHASSFLDSKMTIYQSPSHMLETKPLSNKEHLDKLNCCEECAPNYEKEAQLLKSDQKKMLPFWLKSHTTEDHKKDELTHLKIKWNRLCHSLHQSKQPQNQWNWNTSNNSSSSISFANNATYNSTSNLVPRFRRQQSCAIEFNFSDKWEATEPILGSLVSMEGKEVKTTLALGNGGSGETVGNITDRTLQRAHICKLLQENVPWQFETVPSVAEALINSKSAKQSNITWLSVQGNDIIGKRRLALAVAESVFGSTDVFLHLDMLKKETSIAPFPEMLAGAMKTHQKLVVLIENVDFADAQFKKFLSDGFETGKFGNLSSMEENSRHAIFMLTSGGSTSIEEQNQELVMKLLWQVSETKPNLETPCLGHKQKAELDLFSNIKRPRIEENQEALLVSSKQKKEFSRQSSFNTLDLNMKADEEGDGLDKAGESSPISSDLTRETIADPLNPNGFLDSIENRFELNTSPAREREMKELFLSKIKGSFEDVYGKPYLMNLSVDERVIEDVCVGCGSFTNSMFEKWLRDIFQSSLQTVNFGGKEGILFRLSWGGKGHRKSDSGFIGSSLPKSIQVNYFIE* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2547 815 PANTHER PROTEIN SMAX1-LIKE 5 1 184 - -
Apr9g2547 815 PANTHER PROTEIN SMAX1-LIKE 5 236 779 - -
Apr9g2547 815 Gene3D - 9 168 IPR036628 -
Apr9g2547 815 Gene3D - 418 646 IPR027417 -
Apr9g2547 815 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 184 - -
Apr9g2547 815 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 236 779 - -
Apr9g2547 815 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
Apr9g2547 815 Pfam Clp amino terminal domain, pathogenicity island component 26 46 IPR004176 -
Apr9g2547 815 Pfam Clp amino terminal domain, pathogenicity island component 131 167 IPR004176 -
Apr9g2547 815 ProSiteProfiles Clp repeat (R) domain profile. 8 170 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2547 Apr-Chr9 32676373 32680196 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2547 - - aprc:113853131 1088.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2547 9 32676373 32680196 Apr9g2547 9 32676373 32680196 ECH
Apr9g2547 9 32676373 32680196 Apr1g2333 1 32964474 32968766 PCT