Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2333 ATGCGCTCAGGAGCTTGTACATTGCAACAGACCCTCACAGCAGAGGCTGCTTCAGTGTTGAAGCACTCTCTTGGGTTGGCACGCAGAAGGGGCCATGCACAGGTCACCCCTTTGCATGTGGCTGCCACTTTGTTGAGCCTAAGAGCCAGTTCCTTGAGAAGGGCTTGTCTCAAATCTCAGCCACACCAAACTTCACACCCTCTTCAGTGTAGAGCACTTGAACTTTGCTTCAATGTGGCTCTCAATAGGCTTCCAACAACTCCTGGCCCTTTGCTCCACTCTCAGCCTTCTCTTTCCAATGCTCTCATTGCTGCACTCAAGAGAGCACAGGCTCATCAGAGAAGGGGTTGCATTGAGCAACAGCAACAACAGCCTCTTCTCACCATCAAGGTTGAGCTTGAACAGCTCATTATATCTATTCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAGGCTGGTTTCTCCAGCACTGCTGTTAAGAGCAACATAGAGGACACTTCTTCAGCCCCTAATGTTTTTCAGTGTTACAACAGTTCTGGTGGTGTTTTCTCCTCTCCTTGTTCACCTTCTCCTAGTGAGAACCAAAGAGAAAGCATCAATGCTTCTAGTGTTTTCAGGCAGAACCATTTCTTGGCTGCTTACACTTCTGATTTTAGTCCACTTGTGTTTTCTCCACAGAAGAAAGGCACAGCTGTTTCTGTTCCATCAGGTGGACTTGACTTGAGTCTCCATGGTTCCAGTGTCCGTGATTCAAAGATGACGATAACACAGAACCCATCTCATATGCTGGAAACAAAGCTCTTTGGTAACAATAAGGAGGAGCAGGATAAGCTCAACTGTTGTGAAGAATGTGCCTCCAATTATGAAAAAGAAGCTCAATTGTTCAAACCAGGTCAAAAGAACCTGTTGCCTTCGTGGCTTCAGTCTAACACCACCGAAGCCCATCAAAAGGATGAATTAACCCAATTGAAAAGGAAATGGAACAGACTATGTCATTGTCTCCACCAGAGCAAGCAGCCTCAGAACAATTGGAGCAACAATTCAAGTTCTATATCCTTTGCTGATTCACCAGCTAAACCGGCTTATAGCCCCAATAACGTTGTACCTCGGTTCAGGCGCCAACAATCATGCACCATAGAGTTCAATTTCAGCGATGTAACTCAGAAAAAGCCATCATCAACGGAGACAACAACAACAACAACAACGTTGGATTGTCTTAAGGGCATGGAAGGTAATAACAAAGAAGTAAAGATTACTCTTGCACTTGGAAATTCAACATTCGGTGGTTCAGGGCAAACGGTGGAAAATATAACTACTGATAGAACACTGCGAAGAGCTCATATTTGTAAACTGTTGCAGGAGAATGTGCCATGGCAATCTGAAACAGTTCCTTCAATAGCTGAAGCCTTGGTTGGTTCCAATTCAGCAAAGCAAAGTGCTATTACTTGGTTGTTTATGCAGGGCAATGACTCTATTGGGAAAGCAAGGTTGGCACGTGCCATTGCAGAATCAGTGTTTGGTTCAGTTGATGTGATCCTTCACTTGGACATGCTGAGGAAAAAGGAGAATTCAGCAACCCCATTTTCTGAAATGGTGGTTGGAGCATTGAAAACCCATGAAAATCTTGTGATTTTGATAGAAAGTTTTGATTTTGCTGATGCCCAGTTCAGGAAATTCCTTGCAGATGGGTTTGGAACTGCCAAGTTTGGAAATTTATGTAGGACTGAGGAGAATTCAGGCCAAGCAATATTCATATTGACCAATGGTAGCACCAGAAGCAATGAAGAACAGAACATGGAGTCAGTGATCAAGTTGGTTTTACAGATCAATGAAACCAAGCCTACTTTTGAGTCTTCATCACCTTGTTTGGGTCACAAGAGAAGGGCTGAACTTGATTTCTTCACCAAGATAAAGAATCCAAGGATTGAGGAGAAGGAAGAGGATGTGTTGGTTTCTGAAGAAGGGAACAGAAAGAGAGAATTTTCAAGGCATTCTAGCTTTAACAATCTTGATCTCAACATGATAGCTGATGAAGGGGATGATGGGGAAGACAAAACTGGGGGACATAGCCCCATTTCAAGTGATTTGACTAGAGAAAATGTAGCAGATCCTTTGAGCTCAAATGGGTCTCTTGACTCAGTTGAGAACAAGTTTGAGTTCAATGAGAATCCAGAGAAGGAAAAAGAGATGGGAGAAAATTTTTTGAACATGATAAAAGAGTCTTTCGAGGAGGTTTATGGCAAGCAATGTGTGGTGAATTTTACTGTAGAAGAGAGGGTGATAGAGGAAATTGGTGTTGGGTGTGGTTCTTTTACTAACAGCATGTTTGAGAAATGGCTGAAAGACATTTTTCAAAGCAGTTTACAAACAGTTAACTTTGGTGGGAAGGAGGGTATAGGTTTTACACTTTGTTGGGGTGGTAAAGGTGATAGGAAATCGGATAGTGGGTTCATGGGTACTTGTTTGCCCAAGAATATCCAAGTTAACTACTTCATGGATTGA 2505 0.4303 MRSGACTLQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRASSLRRACLKSQPHQTSHPLQCRALELCFNVALNRLPTTPGPLLHSQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVELEQLIISILDDPSVSRVMREAGFSSTAVKSNIEDTSSAPNVFQCYNSSGGVFSSPCSPSPSENQRESINASSVFRQNHFLAAYTSDFSPLVFSPQKKGTAVSVPSGGLDLSLHGSSVRDSKMTITQNPSHMLETKLFGNNKEEQDKLNCCEECASNYEKEAQLFKPGQKNLLPSWLQSNTTEAHQKDELTQLKRKWNRLCHCLHQSKQPQNNWSNNSSSISFADSPAKPAYSPNNVVPRFRRQQSCTIEFNFSDVTQKKPSSTETTTTTTTLDCLKGMEGNNKEVKITLALGNSTFGGSGQTVENITTDRTLRRAHICKLLQENVPWQSETVPSIAEALVGSNSAKQSAITWLFMQGNDSIGKARLARAIAESVFGSVDVILHLDMLRKKENSATPFSEMVVGALKTHENLVILIESFDFADAQFRKFLADGFGTAKFGNLCRTEENSGQAIFILTNGSTRSNEEQNMESVIKLVLQINETKPTFESSSPCLGHKRRAELDFFTKIKNPRIEEKEEDVLVSEEGNRKREFSRHSSFNNLDLNMIADEGDDGEDKTGGHSPISSDLTRENVADPLSSNGSLDSVENKFEFNENPEKEKEMGENFLNMIKESFEEVYGKQCVVNFTVEERVIEEIGVGCGSFTNSMFEKWLKDIFQSSLQTVNFGGKEGIGFTLCWGGKGDRKSDSGFMGTCLPKNIQVNYFMD* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2333 834 Gene3D - 429 639 IPR027417 -
Apr1g2333 834 Coils Coil 272 292 - -
Apr1g2333 834 MobiDBLite consensus disorder prediction 340 360 - -
Apr1g2333 834 Pfam Clp amino terminal domain, pathogenicity island component 131 166 IPR004176 -
Apr1g2333 834 Pfam Clp amino terminal domain, pathogenicity island component 26 46 IPR004176 -
Apr1g2333 834 ProSiteProfiles Clp repeat (R) domain profile. 8 170 IPR004176 -
Apr1g2333 834 MobiDBLite consensus disorder prediction 340 357 - -
Apr1g2333 834 MobiDBLite consensus disorder prediction 691 716 - -
Apr1g2333 834 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 232 807 - -
Apr1g2333 834 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 188 - -
Apr1g2333 834 PANTHER PROTEIN SMAX1-LIKE 5 232 807 - -
Apr1g2333 834 PANTHER PROTEIN SMAX1-LIKE 5 1 188 - -
Apr1g2333 834 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
Apr1g2333 834 MobiDBLite consensus disorder prediction 675 716 - -
Apr1g2333 834 Gene3D - 9 169 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2333 Apr-Chr1 32964474 32968766 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2333 - - aprc:113853131 1571.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2333 1 32964474 32968766 Apr1g2333 1 32964474 32968766 ECH
Apr9g2547 9 32676373 32680196 Apr1g2333 1 32964474 32968766 PCT